Job Description P00350 Confidence 99.80% Date Thu Jan 5 10:56:33 GMT 2012 Rank 55 Aligned Residues 221 % Identity 21% Template c3dzbA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus Resolution 2.46 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	.	.	T	V	S	I	F	N	R	S	R	E	K	T	E	E	V	I	A	E	N	P	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	E	S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	A	G	T	D
Query Conservation																										.	.
Alig confidence																										.	.																						.	.																.	.	.								.
Template Conservation																																																	.	.																.	.	.								.
Template Sequence		K	T	I	Y	I	A	G	L	G	L	I	G	G	S	L	A	L	G	I	K	R	D	H	P	D	Y	E	I	L	G	Y	N	R	S	D	Y	S	R	N	I	A	L	E	R	G	I	V	.	.	D	R	A	T	G	D	F	K	E	F	A	P	L	A	D	.	.	.	V	I	I	L	A	V	P	.	I	K	Q	T	X
Template Known Secondary structure							S			S												T	T		T	T	S							S											T		S		.	.	S				S						G	G	G		S	.	.	.						S		.
Template Predicted Secondary structure																																																	.	.																.	.	.								.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.		.	.	.	.	.
		82	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.		.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure											.																																														.	.	.			.						.	.	.
Query SS confidence											.																																														.	.	.			.						.	.	.
Query Sequence		A	A	I	D	S	L	K	P	Y	.	L	D	K	G	D	I	I	I	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	I	G	T	G	V	S	G	G	E	E	G	A	L	.	.	.	K	G	.	P	S	I	M	P	.	.	.	G	G	Q	K	E	A	Y	E	L	V	A
Query Conservation											.																																														.	.	.			.						.	.	.
Alig confidence											.																																														.	.	.			.						.	.	.
Template Conservation
Template Sequence		A	Y	L	K	E	L	A	D	L	D	L	K	D	N	V	I	I	T	D	A	G	S	T	K	R	E	I	V	E	A	A	E	R	Y	L	T	G	K	N	V	Q	F	V	G	S	H	P	X	A	G	S	A	A	D	V	T	L	F	E	N	A	Y	Y	I	F	T	P	T	S	L	T	K	E	T	T	I	P	E	L	K
Template Known Secondary structure								T	T	S				T	T								S														T	T	S	S										B						T	T	T	T	T	T	S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.											.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.									.	.											.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.									.	.											.	.	.	.	.
Query Sequence		P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	.	.	.	.	.	.	.	.	.	.	D	G	A	G	H	Y	V	K	.	.	M	V	H	N	G	I	E	Y	G	D	.	.	.	.	.	M	Q	L	I	A	E	A	Y	S	L	L	K	G	G	L	N	L	T	N	E	E	L	A
Query Conservation																								.	.	.	.	.	.	.	.	.	.									.	.											.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.									.	.											.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		D	I	L	S	G	L	K	S	R	.	.	.	.	.	.	.	Y	V	E	I	D	A	A	E	H	D	R	V	T	S	Q	I	S	H	F	P	H	L	L	A	S	G	L	X	E	Q	A	A	D	Y	A	Q	A	H	E	X	T	N	H	F	A	A	G	G	F	R	D	X	T	R	I	A	E	S	E	P	G	X	W	A
Template Known Secondary structure				G	G	G	G				.	.	.	.	.	.	.																	T																						T															G	G	G	G	S
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	F	T	E	W	N	N	G	E	L	S	S	Y	L	I	D	I	T	K	D	I
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		S	I	L	X	T	.	N	G	P	A	V	L	D	R	I	E	D	F	K	K	R	L
Template Known Secondary structure							.	T
Template Predicted Secondary structure							.
Template SS confidence
		237	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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