Job Description P00350 Confidence 99.84% Date Thu Jan 5 10:56:33 GMT 2012 Rank 46 Aligned Residues 224 % Identity 17% Template c3b1fA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 mutans Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		M	S	K	Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	.	.	T	V	S	I	F	N	R	S	R	E	K	T	E	E	V	I	A	E	N	P	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	E	S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	A
Query Conservation																													.	.
Alig confidence																													.	.																						.	.	.	.	.																							.
Template Conservation																																																				.	.	.	.	.																							.
Template Sequence		X	E	E	K	T	I	Y	I	A	G	L	G	L	I	G	A	S	L	A	L	G	I	K	R	D	H	P	H	Y	K	I	V	G	Y	N	R	S	D	R	S	R	D	I	A	L	E	R	G	I	V	.	.	.	.	.	D	E	A	T	A	D	F	K	V	F	A	A	L	A	D	V	I	I	L	A	V	P	.	I	K
Template Known Secondary structure		G											S															T	T	S							S	S										T	T	S		.	.	.	.	.	S				S		T	T	T	T	G	G	G		S						S		.
Template Predicted Secondary structure																																																				.	.	.	.	.																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.
		79	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.									.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																																				.													.	.	.	.	.	.	.	.
Query SS confidence														.																																				.													.	.	.	.	.	.	.	.
Query Sequence		G	T	D	A	A	I	D	S	L	K	P	Y	.	L	D	K	G	D	I	I	I	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	I	G	T	.	G	V	S	G	G	E	E	G	A	L	K	G	.	.	.	.	.	.	.	.	P	S	I	M	P	G	G	Q	K	E	A
Query Conservation														.																																				.													.	.	.	.	.	.	.	.
Alig confidence														.																																				.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	I	D	F	I	K	I	L	A	D	L	D	L	K	E	D	V	I	I	T	D	A	G	S	T	K	Y	E	I	V	R	A	A	E	Y	Y	L	K	D	K	P	V	Q	F	V	G	S	H	P	X	A	S	G	A	V	A	A	N	V	N	L	F	E	N	A	Y	Y	I	F	S	P	S	C	L	T	K	P	N	T
Template Known Secondary structure												T	S				T	T								S														T	T	S	S										.			T	T	S			T	T	T	T	T	T	S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.													.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Query Sequence		Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	D	G	A	G	H	Y	V	K	M	V	.	.	.	.	.	.	.	.	.	.	.	.	H	N	G	I	E	Y	G	D	.	.	.	.	.	M	Q	L	I	A	E	A	Y	S	L	L	K	G	G	L	N	L	T
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		I	P	A	L	Q	D	L	L	S	G	L	H	A	R	.	.	.	.	.	.	.	Y	V	E	I	D	A	A	E	H	D	C	V	T	S	Q	I	S	H	F	P	H	I	I	A	S	S	L	X	K	Q	A	G	D	F	S	E	S	H	E	X	T	K	H	F	A	A	G	G	F	R	D	X	T	R	I	A	E	S	E
Template Known Secondary structure									T	G	G	G				.	.	.	.	.	.	.																	T																						T													T	T	G	G	G	G	S
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	E	L	A	Q	T	F	T	E	W	N	N	G	E	L	S	S	Y	L	I	D	I	T	K	D	I
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		P	G	X	W	T	S	I	L	L	T	.	N	Q	E	A	V	L	D	R	I	E	N	F	K	Q	R	L
Template Known Secondary structure												.	S
Template Predicted Secondary structure												.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions