Job Description P00350 Confidence 99.14% Date Thu Jan 5 10:56:33 GMT 2012 Rank 96 Aligned Residues 191 % Identity 17% Template c1zcjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	T	V	S	I	F	N	R	S	R	E	K	T	E	E	V	I	A	E	N	P	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		Q	P	V	S	S	V	G	V	L	G	L	G	T	M	G	R	G	I	A	I	S	F	A	R	V	G	I	S	V	V	A	V	E	S	D	P	K	Q	L	D	A	A	K	K	I	I	.	.	.	.	.	.	.	T	F	T	L	E	K	E	A	S	R	A	H	Q	N	G	Q	A	S	A	K	P	K	L	R	F	S	S
Template Known Secondary structure													S												T	T	T								S	S												.	.	.	.	.	.	.														T	T												S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
					63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.																			.																																							.	.							.
Query SS confidence		.	.	.																			.																																							.	.							.
Query Sequence		.	.	.	S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	A	G	T	.	D	A	A	I	D	S	L	K	P	Y	L	D	K	G	D	I	I	I	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	.	.	G	F	N	F	I	G	.	T	G	V	S	G	G	E	E	G	A	L
Query Conservation		.	.	.																			.																																							.	.							.
Alig confidence		.	.	.																			.																																							.	.							.									.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		S	T	K	E	L	S	T	V	D	L	V	V	E	A	V	F	E	D	M	N	L	K	K	K	V	F	A	E	L	S	A	L	C	K	P	G	A	F	L	C	T	N	T	S	A	L	N	V	D	D	I	A	S	S	T	D	R	P	Q	L	V	I	G	T	H	F	F	S	P	A	H	V	M	R	L	L	E	.	.	.
Template Known Secondary structure			G	G	G	G	T	T		S								S																S		T	T								S	S	S							T	T	S	S		G	G	G								S	S	T	T	T						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		136	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		K	G	P	S	I	M	P	G	G	.	.	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I	A	E	A	Y	S	L	L	K	G	G	L	N	L	T	N	E
Query Conservation											.	.
Alig confidence		.	.	.	.						.	.																			.	.	.	.	.	.	.					.									.	.	.	.				.	.	.																.	.
Template Conservation		.	.	.	.																										.	.	.	.	.	.	.					.									.	.	.	.				.	.	.																.	.
Template Sequence		.	.	.	.	V	I	P	S	R	Y	S	S	P	T	T	I	A	T	V	M	S	L	S	K	K	I	G	K	I	.	.	.	.	.	.	.	G	V	V	V	.	G	N	C	Y	G	F	V	G	.	.	.	.	N	R	M	.	.	.	L	A	P	Y	Y	N	Q	G	F	F	L	L	E	E	G	.	.	S	K	P	E
Template Known Secondary structure		.	.	.	.					S	S																T	T			.	.	.	.	.	.	.				B	.			S	T	T	T	T		.	.	.	.				.	.	.														T	T	.	.
Template Predicted Secondary structure		.	.	.	.																										.	.	.	.	.	.	.					.									.	.	.	.				.	.	.																.	.
Template SS confidence
						444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.								.	470	.	.		.	.	.	.	.	.	.	480					.	.	.				.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.
		214	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	A	Q	T	F	T	E	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	D	G	V	L	E	E	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions