Job Description P00350 Confidence 99.72% Date Thu Jan 5 10:56:33 GMT 2012 Rank 69 Aligned Residues 289 % Identity 11% Template c1yj8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: initial structural analysis of plasmodium falciparum glycerol-3-2 phosphate dehydrogenase Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.										30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.											.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	T	V	.	.	.	.	.	.	.	.	.	S	I	F	N	R	S	R	E	K	T	E	E	V	I	A	E	N	P	.	.	.	.	.	.	.	.	.	.	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	E
Query Conservation																														.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	L	K	I	S	I	L	G	S	G	N	W	A	S	A	I	S	K	V	V	G	T	N	A	K	N	N	Y	L	F	E	N	E	V	R	M	W	I	R	D	E	F	E	R	M	V	D	I	I	N	N	K	H	E	N	T	K	Y	L	K	G	V	P	L	P	H	N	I	V	A	H	S	D	L	A	S	V	I	N
Template Known Secondary structure		S		B								S																		T	T	B		S								S														B		T	T	T	S	T	T		B			T	T					S	S	S					T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																														.									.	.	.	.	.	.
Query SS confidence																														.									.	.	.	.	.	.
Query Sequence		S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	A	G	T	D	A	A	I	D	S	L	K	P	Y	.	L	D	K	G	D	I	I	I	.	.	.	.	.	.	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	I	G	T	G	V	S	G	G	E	E	G	A	L
Query Conservation																														.									.	.	.	.	.	.
Alig confidence					.	.	.								.															.									.	.	.	.	.	.
Template Conservation					.	.	.								.
Template Sequence		D	A	D	.	.	.	L	L	I	F	I	V	P	.	C	Q	Y	L	E	S	V	L	A	S	I	K	E	I	K	I	A	S	H	A	K	A	I	S	L	T	K	G	F	I	V	K	K	N	Q	M	K	L	C	S	N	Y	I	S	D	F	L	N	I	P	C	S	A	L	S	G	A	N	I	A	M	D	V	A	M	E
Template Known Secondary structure		T		S	.	.	.								.												T						T	T									S					T	T													S	S	S								S								T	T
Template Predicted Secondary structure					.	.	.								.
Template SS confidence
		103	.	.				.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		136	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure				.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	.	P	S	I	M	P	G	G	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I
Query Conservation				.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																										.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.
Template Sequence		N	F	S	E	A	T	I	G	G	N	D	K	D	S	L	V	I	W	Q	R	V	F	D	L	P	Y	F	K	.	.	.	.	.	.	.	I	N	C	V	N	E	T	I	E	V	E	I	C	G	A	L	K	N	I	I	T	L	A	C	G	F	C	D	G	L	N	L	P	T	N	S	K	S	A	I	I	R	N	G	I
Template Known Secondary structure											S														B	T	T			.	.	.	.	.	.	.					S		S																							T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.																																																							.
Query SS confidence																			.	.	.	.	.	.	.	.																																																							.
Query Sequence		A	E	A	Y	S	L	L	K	G	G	L	N	L	T	N	E	E	.	.	.	.	.	.	.	.	L	A	Q	T	F	T	E	W	N	N	G	E	L	S	S	Y	L	I	D	I	T	K	D	I	F	T	K	K	D	E	D	G	N	Y	L	V	D	V	I	L	D	E	A	A	N	K	G	T	G	K	W	T	S	Q	.
Query Conservation																			.	.	.	.	.	.	.	.																																																							.
Alig confidence									.										.	.	.	.	.	.	.	.																												.	.	.	.	.																							.
Template Conservation									.																																													.	.	.	.	.
Template Sequence		N	E	M	I	L	F	G	.	K	V	F	F	Q	K	F	N	E	N	I	L	L	E	S	C	G	F	A	D	I	I	T	S	F	L	A	G	R	N	A	K	C	S	A	E	F	I	K	S	T	P	K	K	.	.	.	.	.	T	W	E	E	L	E	N	E	I	L	K	G	Q	K	L	Q	G	T	V	T	L	K	Y
Template Known Secondary structure									.				S	S				G	G	G	G	G	S	T	T	T										S	S	S	S										T	T	T	T		.	.	.	.	.									T	T	T	T
Template Predicted Secondary structure									.																																													.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
					269	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.										.	.
Query SS confidence		.	.	.										.	.
Query Sequence		.	.	.	S	A	L	D	L	G	E	P	L	.	.	S	L	I	T	E	S	V	F	A	R	Y	I	S	S	L	K	D	Q	R	V	A	A	S	K	V	L	S	G	P	Q	A	Q
Query Conservation		.	.	.										.	.
Alig confidence		.	.	.										.	.								.	.
Template Conservation																							.	.
Template Sequence		V	Y	H	M	I	K	E	K	N	M	T	N	E	F	P	L	F	T	V	L	H	.	.	K	I	S	F	E	N	E	D	P	S	S	L	L	K	T	F	M	N	N	K	I	N	Q
Template Known Secondary structure									T	T		T	T	T									.	.					S				T	T							S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions