Job Description P00350 Confidence 99.50% Date Thu Jan 5 10:56:33 GMT 2012 Rank 84 Aligned Residues 281 % Identity 15% Template c1wpqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad+], PDBTitle: ternary complex of glycerol 3-phosphate dehydrogenase 12 with nad and dihydroxyactone Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.													.	.	.	.	40	.	.	.	.	.	.	.											.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	T	V	S	I	F	N	R	S	.	.	.	.	.	.	.	.	.	.	.	.	R	E	K	T	E	E	V	I	A	E	N	P	.	.	.	.	.	.	.	.	.	.	G	K	K	L	V	P	Y	Y	T	V	K	E
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	K	K	V	C	I	V	G	S	G	N	W	G	S	A	I	A	K	I	V	G	G	N	A	A	Q	L	A	Q	F	D	P	R	V	T	M	W	V	F	E	E	D	I	G	G	K	K	L	T	E	I	I	N	T	Q	H	E	N	V	K	Y	L	P	G	H	K	L	P	P	N	V	V	A	V	P	D	V	V	Q
Template Known Secondary structure												S																		S	S															T	T														T	T	T	S	T	T					T	T					S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.
Query Sequence		F	V	E	S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	A	G	T	D	A	A	I	D	S	L	K	P	Y	L	D	K	G	D	I	I	I	.	.	.	.	.	.	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	I	G	T	G	V	S	G	G	E	E	G
Query Conservation																																									.	.	.	.	.	.
Alig confidence								.	.	.								.																							.	.	.	.	.	.
Template Conservation								.	.	.								.
Template Sequence		A	A	E	D	A	D	.	.	.	I	L	I	F	V	V	P	.	H	Q	F	I	G	K	I	C	D	Q	L	K	G	H	L	K	A	N	P	T	G	I	S	L	I	K	G	V	D	E	G	P	N	G	L	K	L	I	S	E	V	I	G	E	R	L	G	I	P	M	S	V	L	M	G	A	N	I	A	S	E	V	A
Template Known Secondary structure				T	T		S	.	.	.						S		.												T	T		S		S	S														T	T													T	T								S	S
Template Predicted Secondary structure								.	.	.								.
Template SS confidence
		82	.	.	.	.	.				.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		134	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	K	G	.	P	S	I	M	P	G	G	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q
Query Conservation						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																										.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.
Template Sequence		D	E	K	F	C	E	T	T	I	G	C	K	D	P	A	Q	G	Q	L	L	K	E	L	M	Q	T	P	N	F	R	.	.	.	.	.	.	.	I	T	V	V	Q	E	V	D	T	V	E	I	C	G	A	L	K	N	V	V	A	V	G	A	G	F	C	D	G	L	G	F	G	D	N	T	K	A	A	V	I	R	L
Template Known Secondary structure		T	T										S														B	T	T			.	.	.	.	.	.	.					S																									T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.											.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	A	E	A	Y	S	L	L	K	G	G	L	N	L	T	N	E	E	.	.	.	.	.	.	.	.	.	L	A	Q	T	F	T	E	W	N	N	G	.	.	.	.	.	.	.	.	.	.	E	L	S	S	Y	L	I	D	I	T	K	D	I	F	T	K	K	D	E	D	G	N	Y	L	V	D	V	I	L	D	E
Query Conservation																					.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence											.										.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		G	L	M	E	M	I	A	F	A	.	K	L	F	C	S	G	P	V	S	S	A	T	F	L	E	S	C	G	V	A	D	L	I	T	T	C	Y	G	G	R	N	R	K	V	A	E	A	F	A	R	T	G	K	S	I	E	Q	L	E	K	E	L	L	N	G	Q	K	L	Q	G	P	E	T	A	R	E	L	Y	S	I
Template Known Secondary structure											.				S	S	S				G	G	G	G	G	S	T	T	T																																			S	T	T
Template Predicted Secondary structure											.
Template SS confidence
		231	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	A	N	K	G	T	G	K	W	T	S	Q	S	A	L	D	L	G	E	P	L	.	.	S	L	I	T	E	S	V	F	A	R	Y	I	S	S	L	K	D	Q	R	V	A	A	S	K	V	L	S	G	P	Q	A	Q
Query Conservation																							.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.							.	.							.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	G	L	V	D	K	F	P	L	F	M	A	V	.	.	Y	K	V	C	Y	E	G	Q	P	V	G	E	F	I	H	C	L	Q	N	H	P	E	H	M
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T		G	G	G								.	.						T				G	G	G							T			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		310	.														.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions