Job Description P00350 Confidence 99.94% Date Thu Jan 5 10:56:33 GMT 2012 Rank 31 Aligned Residues 204 % Identity 14% Template c1mv8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa Resolution 1.55 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	T	V	S	I	F	N	R	S	R	E	K	T	E	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	E	N	P	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	E	S	L	E	T	P
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		M	R	I	S	I	F	G	L	G	Y	V	G	A	V	C	A	G	C	L	S	A	R	G	H	E	V	I	G	V	D	V	S	S	T	K	I	D	L	I	N	Q	G	K	S	P	I	V	E	P	G	L	E	A	L	L	Q	Q	G	R	Q	T	G	R	L	S	G	T	T	D	F	K	K	A	V	L	D	S	D	.	.
Template Known Secondary structure										S	T	T											T	T								S										T	T			S	S			T	T											T	T						S								T		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.										.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																			.	.	.																												.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																			.	.	.																												.	.	.
Query Sequence		R	R	I	L	L	M	V	K	A	G	.	.	.	.	.	.	.	.	.	A	G	T	D	A	A	I	D	S	L	K	P	Y	L	D	K	G	D	.	.	.	I	I	I	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	.	.	.	I	G	T	G	V	S	G	G	E	E
Query Conservation												.	.	.	.	.	.	.	.	.																			.	.	.																												.	.	.
Alig confidence		.										.	.	.	.	.	.	.	.	.																			.	.	.																												.	.	.
Template Conservation		.
Template Sequence		.	V	S	F	I	C	V	G	T	P	S	K	K	N	G	D	L	D	L	G	Y	I	E	T	V	C	R	E	I	G	F	A	I	R	E	K	S	E	R	H	T	V	V	V	R	S	T	V	L	P	G	T	V	N	N	V	V	I	P	L	I	E	D	C	S	G	K	K	A	G	V	D	F	G	V	G	T	N	P	E
Template Known Secondary structure		.										B		T	T	S	S	B																	T	T			S								S				T	T					T										S			B	T	T	T	B
Template Predicted Secondary structure		.
Template SS confidence
			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		133	.	.	.	.		.	.										140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure							.			.	.	.	.	.	.	.	.	.
Query SS confidence							.			.	.	.	.	.	.	.	.	.
Query Sequence		G	A	L	K	G	.	P	S	.	.	.	.	.	.	.	.	.	I	M	P	G	G	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I	A	E	A	Y	S
Query Conservation							.			.	.	.	.	.	.	.	.	.
Alig confidence							.			.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.							.
Template Conservation																																										.	.	.	.	.	.	.							.
Template Sequence		F	L	R	E	S	T	A	I	K	D	Y	D	F	P	P	M	T	V	I	G	E	L	D	K	Q	T	G	D	L	L	E	E	I	Y	R	E	L	D	A	P	.	.	.	.	.	.	.	I	I	R	K	T	V	.	E	V	A	E	M	I	K	Y	T	C	N	V	W	H	A	A	K	V	T	F	A	N	E	I	G	N
Template Known Secondary structure					T	T	S							S		S							S	S												T	T	S	S	S		.	.	.	.	.	.	.							.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	K	G	G	L	N	L	T	N	E	E	L	A	Q	T	F
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		I	A	.	K	A	V	G	V	D	G	R	E	V	M	D	V	I
Template Known Secondary structure				.			T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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