Job Description P00350 Confidence 99.91% Date Thu Jan 5 10:56:33 GMT 2012 Rank 38 Aligned Residues 296 % Identity 14% Template c1m67A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.
Query Sequence		M	S	K	Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	Y	T	V	S	I	F	N	R	S	R	E	K	T	E	E	V	I	A	E	N	P	G	K	K	L	V	P	.	.	.	.	.	.	.	Y	Y	T	V	K	E	F	V	E	S	L	E	T	P	R	R	I	L	L	M
Query Conservation																																																							.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	L	N	K	A	V	V	F	G	S	G	A	F	G	T	A	L	A	M	V	L	S	K	K	C	R	E	V	C	V	W	H	M	N	E	E	E	V	R	L	V	N	E	K	R	E	N	V	L	F	L	K	G	V	Q	L	A	S	N	I	T	F	T	S	D	V	E	K	A	Y	N	G	A	E	I	I	L	F	V
Template Known Secondary structure													S												T	T									S												T	S		T	T	T	S	T	T					T	T					S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.
Predicted Secondary structure																				.	.	.	.	.																	.	.	.	.	.																															.
Query SS confidence																				.	.	.	.	.																	.	.	.	.	.																															.
Query Sequence		V	K	A	G	A	G	T	D	A	A	I	D	S	L	K	P	Y	L	.	.	.	.	.	D	K	G	D	I	I	I	D	G	G	N	T	F	F	Q	D	.	.	.	.	.	T	I	R	R	N	R	E	L	S	A	E	G	F	N	F	I	G	T	G	V	S	G	G	E	E	G	A	L	K	G	.	P	S	I	M	P
Query Conservation																				.	.	.	.	.																	.	.	.	.	.																															.
Alig confidence				.																.	.	.	.	.																	.	.	.	.	.																															.
Template Conservation				.
Template Sequence		I	P	.	T	Q	F	L	R	G	F	F	E	K	S	G	G	N	L	I	A	Y	A	K	E	K	Q	V	P	V	L	V	C	T	K	G	I	E	R	S	T	L	K	F	P	A	E	I	I	G	E	F	L	P	S	P	L	L	S	V	L	A	G	P	S	F	A	I	E	V	A	T	G	V	F	T	C	V	S	I	A
Template Known Secondary structure				.																							T									S			T	T	T									T	T	T	S		G	G	G						S	S								T	T
Template Predicted Secondary structure				.
Template SS confidence
		93	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	I	G	A	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I	A	E	A	Y	S	L
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		S	A	D	I	N	V	A	R	R	L	Q	R	I	M	S	T	G	D	R	S	.	.	.	.	.	.	.	F	V	C	W	A	T	T	D	T	V	G	C	E	V	A	S	A	V	K	N	V	L	A	I	G	S	G	V	A	N	G	L	G	M	G	L	N	A	R	A	A	L	I	M	R	G	L	L	E	I	R	D	L
Template Known Secondary structure			S	S												S		T	T	S	S	.	.	.	.	.	.	.							S																									T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.								.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.
Predicted Secondary structure																																											.																														.	.	.	.
Query SS confidence																																											.																														.	.	.	.
Query Sequence		L	K	G	G	L	N	L	T	N	E	E	L	A	Q	T	F	T	E	W	N	N	G	E	L	S	S	Y	L	I	D	I	T	K	D	I	F	T	K	K	D	E	.	D	G	N	Y	L	V	D	V	I	L	D	E	A	A	N	K	G	T	G	K	W	T	S	Q	S	A	L	D	L	.	.	.	.	G	E	P	L	S
Query Conservation																																											.																														.	.	.	.
Alig confidence				.													.	.	.																								.											.	.	.																	.	.	.	.
Template Conservation				.													.	.	.																																			.	.	.
Template Sequence		T	A	.	A	L	G	G	D	G	S	A	V	F	G	L	.	.	.	A	G	L	G	D	L	Q	L	T	C	S	S	E	L	S	R	N	F	T	V	G	K	K	L	G	K	G	L	P	I	E	E	I	Q	.	.	.	R	A	V	A	E	G	V	A	T	A	D	P	L	M	R	L	A	K	Q	L	K	V	K	M	P
Template Known Secondary structure				.		T	T				T	T	T	T	S	T	.	.	.	T	T									S		T	T	S												T								.	.	.																				T	T
Template Predicted Secondary structure				.													.	.	.																																			.	.	.
Template SS confidence
		245	.		.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	E	S	V	F	A	R	Y	I	S	S	L	K	D	Q	R	V	A	A	S	K	V	L	S	G	P	Q	A	Q	P	A	G	D
Query Conservation
Alig confidence		.							.
Template Conservation		.							.
Template Sequence		.	L	C	H	Q	I	Y	.	E	I	V	Y	K	K	K	N	P	R	D	A	L	A	D	L	L	S	C	G	L	Q	D	E	G	L	P
Template Known Secondary structure		.							.					S												G	G	G		S
Template Predicted Secondary structure		.							.
Template SS confidence
			321	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions