Job Description P16700 Confidence 99.67% Date Thu Jan 5 11:35:45 GMT 2012 Rank 73 Aligned Residues 264 % Identity 16% Template d3thia_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.00

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		27	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		E	L	L	N	S	S	Y	D	V	.	.	.	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I
Query Conservation											.	.	.
Alig confidence											.	.	.																		.	.	.	.	.	.																.	.	.	.											.
Template Conservation																															.	.	.	.	.	.																.	.	.	.											.
Template Sequence		T	L	K	V	A	I	Y	P	Y	V	P	D	P	A	R	F	Q	A	A	V	L	D	Q	W	Q	R	Q	E	P	.	.	.	.	.	.	G	V	K	L	E	F	T	D	W	D	S	Y	S	A	D	.	.	.	.	P	P	D	D	L	D	V	F	V	L	.	D	S	I	F	L	S	H	F	V	D	A	G	Y	L	L
Template Known Secondary structure									S		S	S																		T	.	.	.	.	.	.	T	S									T	T	T			.	.	.	.			T	T							.		G	G	G							T	T
Template Predicted Secondary structure																															.	.	.	.	.	.																.	.	.	.											.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		104																			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	.	.	.	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	R	.	.	.	.	.	.	.	.	S	D	V	K	L	I	F	P	N
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	G	S	Q	D	I	D	Q	A	E	D	V	L	P	F	A	L	Q	G	A	K	R	N	G	E	V	Y	G	L	P	Q	I	L	C	T	N	L	L	F	Y	R	K	G	D	L	K	I	G	Q	V	D	N	I	Y	E	L	Y	K	K	I	G	T	S	H	S	E	Q	I	P	P	P	Q	N	K	G	L	L	I	N
Template Known Secondary structure			B		G	G	G		T	T	G	G	G	B								T			T	T																		T	T						T			B																S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.													.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	.	.	.	.	.	.	.	.	.	.	.	.	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	.	.	.	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		M	A	G	G	T	T	K	A	S	M	Y	L	E	A	L	I	D	V	T	G	Q	Y	T	E	Y	D	L	L	P	P	L	D	P	L	N	D	K	V	I	R	G	L	R	L	L	I	N	M	A	G	E	K	P	S	Q	Y	V	P	E	D	G	D	A	Y	V	R	A	S	W	F	A	Q	G	S	G	R	A	F	I	G
Template Known Secondary structure				S																	T						S	S				S	S	S																										T	T			T	T									T	B
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.								.	.	.
Predicted Secondary structure																																																																					.			.	.	.	.	.	.	.
Query SS confidence																																																																					.			.	.	.	.	.	.	.
Query Sequence		F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	.	Y	Y	.	.	.	.	.	.	.	R	V	N
Query Conservation																																																																					.			.	.	.	.	.	.	.
Alig confidence																																																																					.			.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	E	S	M	M	R	M	G	D	Y	A	E	Q	V	R	F	K	P	I	S	S	S	A	G	Q	D	I	P	L	F	Y	S	D	V	V	S	V	N	S	K	T	A	H	P	E	L	A	K	K	L	A	N	V	M	A	S	A	D	T	V	E	Q	A	L	R	P	Q	A	D	G	Q	Y	P	Q	Y	L	L	P	A
Template Known Secondary structure			T	T						G	G	G	G	G	T							B	S		S	S															T	T		S														S									S			S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	E	V	M	D	K	L	K	D	K	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	H	Q	V	Y	E	A	L	M	Q	D	Y	P
Template Known Secondary structure		B								T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions