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Job DescriptionP16700
Confidence99.88%DateThu Jan 5 11:35:45 GMT 2012
Rank28Aligned Residues261
% Identity15%Templated2onsa1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.55

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70...... ...80.........90.........100.....
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Query Sequence  ELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAI. LQGLKADVVTYNQVTDVQILHDKGKLIPA
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Template Sequence  KLKVFHAGSLTEPMKAFKRAFEEKHP. . . . . . NVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWT
Template Known Secondary structure  GGG
T......T
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   34.....40.........50......... 60.........70.........80.........90.........100.......
 
   106...110.........120.........130... ......140.........150.........160.........170.........180
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Query Sequence  DWQSRLPNNSSPFYSTMGFLVRKGNPKN. . . . . IHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKGKT
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Template Conservation   .........                                        
                             
Template Sequence  I. . . . . . . . . MFAKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDE
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   108 .110.........120.........130.........140.........150.........160.........170........
 
   181...... ..190.........200.........210.........220......
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Query Sequence  EQFMTQF. . . . . . . . . . . . . . . . . . . . . LKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRK. . . . . . . . . . . . .
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Template Conservation                                                   
                              
Template Sequence  LVAKNSNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQHGFNFVELPVEIDLSS
Template Known Secondary structure  TGGGBS

TT


GGG

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TTTSSGGGTS
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   179180.........190.........200.........210.........220.........230.........240.........250........
 
   227..230.........240.........250.........260.........270.........280.........290.........300..
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Query Sequence  . . . QYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITDYYYRVNNPEVMDKLKDKFPQ
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Template Conservation                                
   
   
 
  

 

 
 
 
      
  
     
    
 
  
Template Sequence  PDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILRELGQEPLVPPRADTAVPSLKA
Template Known Secondary structure  GGGTT
TTS






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GGGTT
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   259260.........270.........280.........290.........300.........310.........320.........330.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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