Job Description P16700 Confidence 99.96% Date Thu Jan 5 11:35:45 GMT 2012 Rank 12 Aligned Residues 282 % Identity 17% Template d1y4ta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																			.	.	.																										.	.	.
Query SS confidence																																																			.	.	.																										.	.	.
Query Sequence		L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	.	.	.	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	.	.	.
Query Conservation																																																			.	.	.																										.	.	.
Alig confidence																								.	.	.	.	.	.	.																					.	.	.																										.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		L	N	I	Y	S	A	R	H	Y	N	A	D	F	E	I	I	K	K	F	E	E	K	.	.	.	.	.	.	.	T	G	I	K	V	N	H	T	Q	A	K	A	S	E	L	I	K	R	L	S	L	E	G	S	N	S	P	A	D	I	F	I	T	A	D	I	S	N	L	T	E	A	K	N	L	G	L	L	S	P	V
Template Known Secondary structure											T													.	.	.	.	.	.	.																							G	G	G									S	S										T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
										103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		.	.	.	.	.	.	.	.	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	.	.	.	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K
Query Conservation		.	.	.	.	.	.	.	.																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.																											.	.	.																																											.
Template Conservation																																																																																	.
Template Sequence		S	S	K	Y	L	E	E	F	I	P	A	H	L	R	D	K	D	K	E	W	F	A	I	T	K	R	A	R	I	I	A	Y	N	K	N	T	N	I	D	I	S	K	M	K	N	Y	E	D	L	A	K	A	E	F	K	G	E	I	V	M	R	S	A	T	A	P	Y	S	K	T	L	L	A	S	I	I	A	N	D	.
Template Known Secondary structure										S		G	G	G	B		T	T	S	S															T	T	S					T	T			S	G	G	G	G	G		G	G	G	T	T							T	T	S															.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.
Query Sequence		A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	.	.	.	.	.	.	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E
Query Conservation																																																												.	.	.	.	.	.
Alig confidence		.	.	.	.																																																							.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	N	K	E	A	K	A	W	A	K	G	V	L	E	N	L	A	T	N	P	K	G	G	D	R	D	Q	A	R	Q	V	F	A	G	E	A	K	F	A	V	M	N	T	Y	Y	I	G	L	L	K	N	S	K	N	P	K	D	V	E	V	G	N	S	L	G	I	I	F	P	N	Q	D	N	R	G	T
Template Known Secondary structure		.	.	.	.																B	S	S	S			S	S											T	S		S														T		S	S									T						T	T	T	T	T	T		B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.											.	.	.	.	.	.
Query SS confidence																																							.											.	.	.	.	.	.
Query Sequence		F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	.	.	.	.	.	.	M	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V
Query Conservation																																							.											.	.	.	.	.	.
Alig confidence																																							.											.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	N	I	S	G	I	A	M	T	K	S	S	K	N	Q	D	A	A	K	K	F	M	E	F	M	L	S	P	E	I	Q	K	I	L	T	D	S	N	Y	E	F	P	I	R	N	D	V	E	L	S	Q	T	V	K	D	F	G	T	F	K	E	D	Q	I	P	V	S	K	I	A	E	N	I	K	E	A	V	K	I
Template Known Secondary structure												T	T		S													T	S																S	S	T	T	S														B			S							T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		319	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions