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Job DescriptionP16700
Confidence99.96%DateThu Jan 5 11:35:45 GMT 2012
Rank14Aligned Residues284
% Identity12%Templated1xvya_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.74

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70....... ..80.........90.........100....
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Query Sequence  LNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAIL. . . QGLKADVVTYNQVTDVQILHDKGKLIP.
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Template Sequence  IVIYNAQHENLVKSWVDGFTKD. . . . . . . TGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPL
Template Known Secondary structure 
S
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GGG


S
SSSTT
B


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   4.....10.........20..... ....30.........40.........50.........60.........70......
 
   105....110.........120.........130... ......140.........150.........160.........170..
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Query Sequence  . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKGNPKN. . . IHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKA
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Template Sequence  DAATLAQVEPQYRPSHGRWIGIAARSTVFVYNPAKLSDAQLPKSLLDLAKPEWKGRWAASPSGADFQAIVSALLELK. . .
Template Known Secondary structure 
TTB
GGGS
TT
SS
TTTS
GGG

SSGGGGGSGGGTTS
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   77..80.........90.........100.........110.........120.........130.........140.........150...
 
   173......180.........190.........200.........210.........220.........230 .........240.........250
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Query Sequence  DGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEA. . QGFEVVIPKTNILAEFPVAW
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Template Sequence  . . . GEKATLAWLKAMKTNFTAYKG. . NSTVMKAVNAGQVDSGVIYHYYPFVDGAKTGENSNNIKLYYFKHQDPGAFVSIS
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SS..TSSSTTT
TTTTT



TT
GGG
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   154.....160.........170.... .....180.........190.........200.........210.........220........
 
   251........260.........270.........280.. .......290.........300.........310......... 320......
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Query Sequence  VDKNVQANGTEKAAKAYLNWLYSPQAQTIITD. . YYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVM. . KTHFTSG
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Template Sequence  GGGVLASSKHQQQAQAFIKWITGKQGQEILRTNNAFEYAVGVGA. . ASNPKLVPLKDLDAPKVDAAQLNSKKVVELMTEA
Template Known Secondary structure  BTT
TTSSSS

B

BTT
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TTS

GGGG





GGG

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   229230.........240.........250.........260.........270.. .......280.........290.........300......
 
   327..
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Query Sequence  GEL
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Template Sequence  GLL
Template Known Secondary structure  T

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   307..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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