Job Description P16700 Confidence 99.96% Date Thu Jan 5 11:35:45 GMT 2012 Rank 16 Aligned Residues 280 % Identity 11% Template d1xvxa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.53

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		Q	A	T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	.	.	.	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G
Query Conservation																																																									.	.	.
Alig confidence																													.	.	.	.	.	.	.																						.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		S	N	D	S	G	I	V	V	Y	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	.	.	.	.	.	.	.	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K
Template Known Secondary structure					S								S																.	.	.	.	.	.	.																							G	G	G				S					S	S	S									T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		101	.	.	.											.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		K	L	I	P	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G
Query Conservation						.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		L	F	A	P	L	D	A	V	T	Q	A	Q	V	A	Q	E	Y	R	P	E	H	G	R	W	T	G	I	A	A	R	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	L	P	K	S	I	M	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	M	L	E
Template Known Secondary structure			B											B		G	G	G	S		S	S	S	S															T	T	T	S		G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	.	.	F	E	V	V	I	P	K	T	N	I	L	A	E
Query Conservation																																																																			.	.
Alig confidence				.	.	.	.	.	.																						.	.																																			.	.
Template Conservation				.	.	.	.	.	.																						.	.
Template Sequence		L	K	.	.	.	.	.	.	G	E	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	.	.	N	S	T	V	M	K	A	V	N	A	G	Q	I	D	G	G	V	I	Y	H	Y	Y	R	F	V	D	Q	A	K	T	G	E	N	S	G	K	T	Q	L	H	Y	F	K	H	Q	D	P	G	A
Template Known Secondary structure				.	.	.	.	.	.																				S	S	.	.										T	T	S	S	S						T								T	T	T		T	T	T	T	T								T	T		G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.																						.	.
Template SS confidence
		155	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																										.	.									.	.	.	.	.	.	.	.
Query SS confidence																																										.	.									.	.	.	.	.	.	.	.
Query Sequence		F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	.	.	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W
Query Conservation																																										.	.									.	.	.	.	.	.	.	.
Alig confidence																																										.	.									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	D	A	A	S	N	P	K	L	V	P	L	K	D	L	D	A	P	K	V	E	P	S	K	L	N	S	K	K	V	V	E	L	M
Template Known Secondary structure											B	T	T		S	S													S										S	S	S			B			B	T	T					T	T	S			G	G	G	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		316	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	A
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		307	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions