Job Description P16700 Confidence 99.96% Date Thu Jan 5 11:35:45 GMT 2012 Rank 15 Aligned Residues 263 % Identity 13% Template d1xc1a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.51

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	.	.	.	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P
Query Conservation																																																					.	.	.
Alig confidence																									.	.	.	.	.	.	.																						.	.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		D	I	T	V	Y	N	G	Q	H	K	E	A	A	Q	A	V	A	D	A	F	T	R	A	.	.	.	.	.	.	.	T	G	I	K	V	K	L	N	S	A	K	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P
Template Known Secondary structure									S																.	.	.	.	.	.	.																					T	T		T	T	S	S		S					S											T	T		B
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
														105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		L	P	A	S	T	I	N	E	T	R	G	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	K	S	V	L	N	Y	A	T	P	K	W	K	N	R	I	G	Y	V	P	T	S	G	A	F	L	E	Q	I	V	A	I	V	K	L	K
Template Known Secondary structure										T			T	T	S				T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	S	S	G	G	G	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	.	.	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P
Query Conservation																																																										.	.
Alig confidence		.	.	.	.	.	.																						.	.																												.	.
Template Conservation		.	.	.	.	.	.																						.	.
Template Sequence		.	.	.	.	.	.	G	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	G	K	P	Y	A	K	.	.	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	F	A	R	E	K	G	V	Q	N	V	H	T	R	L	N	F	V	R	H	R	D	P	G	A	L	V
Template Known Secondary structure		.	.	.	.	.	.																S				S	S	.	.										T	T	S	S	S																		G	G	G										T	T		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.																						.	.
Template SS confidence
								154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	D	K	L	K	D	K	F	P	Q	T	E	L	F	R
Query Conservation																																					.
Alig confidence																																					.											.	.
Template Conservation																																																.	.
Template Sequence		T	Y	S	G	A	A	V	L	K	S	S	Q	N	K	D	E	A	K	K	F	V	A	F	L	A	G	K	E	G	Q	R	A	L	T	A	V	R	A	E	Y	P	L	N	P	H	V	.	.	V	S	T	F	N	L	E	P	I	A	K	L	E
Template Known Secondary structure									B	T	T		S														S								T	T	T	S					S	S	T	T		.	.			S	S					G	G	G	S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions