Phyre 2 alignment of P16700 with d1ursa

Job Description P16700
Confidence 99.87% Date Thu Jan 5 11:35:45 GMT 2012

Rank 31 Aligned Residues 305

% Identity 13% Template d1ursa_

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 1.45

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	26	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.	.																																	.	.
Query SS confidence													.	.																																	.	.
Query Sequence	T	E	L	L	N	S	S	Y	D	V	S	R	.	.	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	.	.	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K
Query Conservation													.	.																																	.	.
Alig confidence													.	.																.	.	.	.														.	.
Template Conservation																														.	.	.	.
Template Sequence	Q	T	I	T	V	W	S	W	Q	T	G	P	E	L	Q	D	V	K	Q	I	A	A	Q	W	A	K	A	H	G	.	.	.	.	D	K	V	I	V	V	D	Q	S	S	N	P	K	G	F	Q	F	Y	A	T	A	A	R	T	G	K	G	P	D	V	V	F	G	M	P	H	D	N	N	G	V	F	A	E	E	G	L
Template Known Secondary structure								S																						.	.	.	.									T	T		T	T		T	T								T	T				S							G	G	G							T	T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

	102	.	.																		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence	M	A	P	V	P	S	G	V	L	N	T	G	L	Y	A	P	N	T	I	D	A	I	K	V	N	G	T	M	Y	S	V	P	V	S	V	Q	V	A	A	I	Y	Y	N	K	K	L	V	P	Q	P	P	Q	T	W	A	E	F	V	K	D	A	N	A	H	G	F	M	Y	D	Q	A	N	L	Y	F	D	Y	A	I	I
Template Known Secondary structure	B					T	T	S			G	G	G	S							T	T			T	T				S														T	T	T		S	S				S																	T	T
Template Predicted Secondary structure
Template SS confidence
	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	.	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence	G	G	Y	G	G	Y	V	F	K	D	N	N	G	T	L	D	P	N	N	I	G	L	D	T	P	G	A	V	Q	A	Y	T	L	M	R	D	M	V	S	K	Y	H	W	M	T	P	S	T	N	G	S	I	A	K	A	E	F	L	A	G	K	I	G	M	Y	V	S	G	P	W	D	T	A	D	I	E	K	A	K	I
Template Known Secondary structure			T	T								T	T									S	S	S																T	S		S			T	T												T	T			S						G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																				.	.																																			.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																			.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	.	.	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.																																			.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																																			.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	F	G	V	T	P	W	P	T	L	P	N	G	K	H	A	T	P	F	L	G	V	I	T	A	F	V	N	K	E	S	K	T	Q	A	A	D	W	S	L	V	Q	A	L	T	S	A	Q	A	Q	Q	M	Y	F	R	D	S	Q	Q	I	P	A	L	L	S	V	Q	R	S	S	A	V	Q	S	S	P	T	F	K	A
Template Known Secondary structure											T	T	S															B	T	T		S													T	S																S	S					T	S					T
Template Predicted Secondary structure
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V	M	K	T	H	F	T	S	G	G	E	L	D	K	L	L	A
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	F	V	E	Q	L	R	Y	A	V	P	M	P	N	I	P	Q	M	Q	A	V	W	Q	A	M	S	I	L	Q	N	I	I	A	G	K	V	S	P	E	Q	G	A	K
Template Known Secondary structure					G	G	G							S	T									T	T								T	S	S
Template Predicted Secondary structure
Template SS confidence
	346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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