Job Description P16700 Confidence 80.21% Date Thu Jan 5 11:35:45 GMT 2012 Rank 109 Aligned Residues 226 % Identity 13% Template d1sw5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		26	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.															.	.	90
Predicted Secondary structure														.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	L	L	N	S	S	Y	D	V	S	R	.	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	V
Query Conservation														.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.														.	.	.	.	.																									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.																									.
Template Sequence		E	R	V	V	I	G	S	K	P	F	N	E	Q	Y	I	L	A	N	M	I	A	I	L	L	E	E	.	.	.	.	.	N	G	Y	K	A	E	V	K	E	G	L	G	G	T	L	V	N	Y	E	A	L	K	R	N	.	D	I	Q	L	Y	V	E	Y	T	G	T	A	Y	N	V	I	L	R	K	Q	P	P	E	L
Template Known Secondary structure										S	S																	.	.	.	.	.	T	T							T	T			S											T	.	S	S	S												T	T	S						S	S
Template Predicted Secondary structure																												.	.	.	.	.																									.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		T	D	V	Q	I	L	H	D	K	G	K	L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		W	D	Q	Q	Y	I	F	D	E	V	K	K	G	L	L	E	A	D	G	V	V	V	A	A	K	L	G	F	R	D	D	Y	A	L	A	V	R	A	D	W	A	E	E	N	G	V	E	K	I	S	D	L	A	E	F	A	D	Q	L	V	F	G	S	D	P	E	F	A	S	R	P	D	G	L	P	Q	I	K	K	V
Template Known Secondary structure																																														T			B	G	G	G	G	T	T	T	G	G	G												S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		Y	G	F	E	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	K	Q	M	E	P	T	L	M	Y	E	A	I	K	N	K	Q	V	D	V	I	P	A	Y	T	T	D	S	R	V	D	L	F	.	.	.	.	.	N	L	K	I	L	E	D	D	K	G	A	L	P	P	Y	D	A
Template Known Secondary structure			T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G							T	T	S		S						T	T							T	.	.	.	.	.	T					B		T	T			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.																			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	.	.	.	Y	S	P	Q	A	Q	T	I	I	T	D
Query Conservation																									.	.	.
Alig confidence							.	.																	.	.	.
Template Conservation							.	.
Template Sequence		I	I	I	V	N	.	.	G	N	T	A	K	D	E	K	L	I	S	V	L	K	L	L	E	D	R	I	D	T	D	T	M	R	A	L	N	Y
Template Known Secondary structure							.	.	T	T	G	G	G										T	T	T	T
Template Predicted Secondary structure							.	.
Template SS confidence
		217	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions