Job Description P16700 Confidence 99.96% Date Thu Jan 5 11:35:45 GMT 2012 Rank 10 Aligned Residues 286 % Identity 14% Template d1q35a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.
Query Conservation																																																																																	.
Alig confidence																											.	.	.	.	.									.																																									.
Template Conservation																											.	.	.	.	.									.
Template Sequence		A	N	E	V	N	V	Y	S	Y	R	Q	P	Y	L	I	E	P	M	L	K	N	F	E	K	D	.	.	.	.	.	T	G	I	K	V	N	I	I	.	F	A	D	G	L	V	D	R	V	K	Q	E	G	E	L	S	P	A	D	V	L	L	T	V	D	I	S	R	V	M	E	I	V	N	A	D	L	A	Q	K	I
Template Known Secondary structure										S	S		G	G	G	T											.	.	.	.	.									.													G	G	G									S											T	T		B
Template Predicted Secondary structure																											.	.	.	.	.									.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
												105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																										.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K
Query Conservation		.	.	.	.	.	.	.	.	.	.																										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.																																										.
Template Conservation																																																																																	.
Template Sequence		D	S	K	V	L	E	K	N	I	P	A	Q	F	R	D	S	N	D	Q	W	F	G	L	T	T	R	A	R	V	I	Y	T	S	K	D	R	V	G	K	L	P	A	G	F	D	Y	L	D	L	A	K	P	E	Y	K	G	K	V	C	V	R	S	G	K	N	S	Y	N	V	S	L	F	A	A	M	I	E	H	Y	.
Template Known Secondary structure										S		G	G	G	B		T	T	S	S															T	T	T	T		S			T	T			G	G	G	G	G	S	G	G	G	T	T					S		T	T	S															.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	.	.	.	.	.	.	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E
Query Conservation																																																													.	.	.	.	.	.
Alig confidence		.	.	.	.																																																								.	.	.	.	.	.															.
Template Conservation		.	.	.	.																																																																												.
Template Sequence		.	.	.	.	G	I	E	K	T	K	A	F	L	E	G	L	K	A	N	L	A	R	K	P	Q	G	G	D	R	D	Q	V	K	A	I	K	E	G	I	C	D	Y	S	I	G	N	S	Y	Y	Y	G	K	M	L	D	D	E	K	Q	K	S	W	A	E	A	A	I	I	N	F	P	S	G	E	H	G	T	H	K	.
Template Known Secondary structure		.	.	.	.															T	B	S	S				S												T	S		S						T									S	T	T	T						T								S	T	T		B			.
Template Predicted Secondary structure		.	.	.	.																																																																												.
Template SS confidence
						155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.												.	.	.	.	.	.
Query SS confidence																																							.												.	.	.	.	.	.
Query Sequence		F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V
Query Conservation																																							.												.	.	.	.	.	.
Alig confidence		.	.																																				.												.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	N	I	S	G	V	V	I	A	K	H	S	P	N	K	A	N	A	V	K	L	I	E	Y	L	S	G	E	K	A	Q	G	L	Y	A	E	L	N	H	E	Y	P	V	K	E	G	I	E	P	S	A	I	V	K	G	W	G	T	F	K	S	D	T	I	K	L	E	D	I	A	K	N	Y	E	A	A	L	K	L
Template Known Secondary structure		.	.								B	T	T		T	T													S																S	S	T	T										T					B										T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		319	320	.	.		.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		M	K	T	H	.	F	T	S
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	D	E	V	K	F	D	D
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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