Job Description P16700 Confidence 99.92% Date Thu Jan 5 11:35:45 GMT 2012 Rank 23 Aligned Residues 282 % Identity 15% Template d1pota_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	.	.	.	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L
Query Conservation																																																						.	.	.
Alig confidence															.	.												.	.	.	.	.	.	.																				.	.	.											.
Template Conservation															.	.												.	.	.	.	.	.	.																																	.
Template Sequence		N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	P	G	L	L	E	Q	F	T	K	E	T	.	.	.	.	.	.	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	.	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I
Template Known Secondary structure										S	S	S	S		.	.	T	T										.	.	.	.	.	.	.										S										T	T		S	S	S		S	S	B	B			.	B	G	G	G								T		B
Template Predicted Secondary structure															.	.												.	.	.	.	.	.	.																																	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.
		103	.																			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.																				.	.
Template Conservation																																																																								.	.
Template Sequence		Q	K	I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	.	.	D	D	A	R	E	V	F	Q
Template Known Secondary structure						T	T	S		T	T	G	G	G	B		G	G	G	S			T	T	S	T	T		S	S															T	T	T	S		T	T	T			S	S	G	G	G	G	S	G	G	G	T	T						.	.	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	.	.	G	T	P	I	D	V	V	W	P	K	E	G	G
Template Known Secondary structure							T	T			T	T																	T	G	G	G						S	S		T						T	T	S		S														T	T	.	.	S									T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.								300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																										.																		.	.	.	.	.	.	.
Query SS confidence																																										.																		.	.	.	.	.	.	.
Query Sequence		L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	D	K	L	K	D	K	.	.	.	.	.	.	.	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S
Query Conservation																																										.																		.	.	.	.	.	.	.
Alig confidence				.	.	.																																				.																		.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		I	F	.	.	.	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D
Template Known Secondary structure				.	.	.						B		B	T	T		T	T													S																S	B	S	T	T	T	T	T	S						T		T	T	T	S									S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		253	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
									315	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	W	P	E	V	M	K	T	H	F	T
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A
Template Known Secondary structure			G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions