Job Description P16700 Confidence 99.95% Date Thu Jan 5 11:35:45 GMT 2012 Rank 18 Aligned Residues 283 % Identity 12% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																			.	.	.																												.
Query SS confidence																																																			.	.	.																												.
Query Sequence		L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	.	.	.	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.
Query Conservation																																																			.	.	.																												.
Alig confidence																								.	.	.	.	.	.	.																					.	.	.																												.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		I	T	V	Y	N	G	Q	Q	K	E	A	A	T	A	V	A	K	A	F	E	Q	E	.	.	.	.	.	.	.	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I
Template Known Secondary structure								S																.	.	.	.	.	.	.	S																						G	G	G				S					S		G	G	G							T	T		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
													105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.																																					.
Template Conservation																																																																																	.
Template Sequence		S	E	Q	T	I	Q	Q	T	A	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	K	W	K	G	K	I	G	Y	V	S	T	S	G	A	F	L	E	Q	V	V	A	L	S	K	M	K	.
Template Known Secondary structure								T	T			T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	T					T	T	S															.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	.	.	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V
Query Conservation																																																														.	.
Alig confidence		.	.	.	.	.																						.	.																																	.	.
Template Conservation		.	.	.	.	.																						.	.
Template Sequence		.	.	.	.	.	G	D	K	V	A	L	N	W	L	K	G	L	K	E	N	G	K	L	Y	A	K	.	.	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V	E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S
Template Known Secondary structure		.	.	.	.	.																				S	S	.	.										T	T	S		S																		G	G	G		S								T	T		G	G	G
Template Predicted Secondary structure		.	.	.	.	.																						.	.
Template SS confidence
							154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.
Predicted Secondary structure																																				.																																								.	.	.
Query SS confidence																																				.																																								.	.	.
Query Sequence		A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V	M	K	T	.	.	.	H	F	T
Query Conservation																																				.																																								.	.	.
Alig confidence																																				.											.	.																												.	.	.
Template Conservation																																															.	.
Template Sequence		Y	S	G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	A	E	Y	P	L	R	A	D	V	.	.	V	S	P	F	N	L	E	P	Y	E	K	L	E	A	P	V	V	S	A	T	T	A	Q	D	K	E	H	A	I	K	L	I	E
Template Known Secondary structure								B	T	T		S														S											S							.			.	.			T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		325	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	G	L
Template Known Secondary structure			.
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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