Job Description P16700 Confidence 99.28% Date Thu Jan 5 11:35:45 GMT 2012 Rank 78 Aligned Residues 235 % Identity 15% Template d1j1na_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																									.	.	.																										.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.																										.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	.	.	.	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	.	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.																										.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.										.	.	.																										.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		P	V	A	K	E	S	F	R	L	.	.	.	.	.	T	N	V	K	L	Q	S	V	A	N	K	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	D	L	P	D	V	V	G	G	D	N	L	K	D	K	F	I	Q	Y	G	Q	E	G	A	F	V	P	L	N	K	L	I	D	Q	Y	A	P	H	I	K
Template Known Secondary structure											.	.	.	.	.		S							S		T	T													T	S	S				S					S	S											T	T	S	B
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
														105	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.													.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.													.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.													.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	.	.	.	F	Y	S	T	M	G	F	L	V	R	K	G	.	.	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	.	.	.	.	.	.	.	.	.	.	.	.	F	P	N	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.													.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.														.	.	.													.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	F	K	S	H	P	E	V	E	R	A	I	K	A	P	D	G	N	I	Y	F	I	P	Y	V	P	D	G	V	V	A	R	G	Y	F	I	R	E	D	W	L	K	K	L	N	L	K	P	P	Q	N	I	D	E	L	Y	T	V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	V	P	F	I
Template Known Secondary structure																	T	T	S												S															T	T						B														S		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	.	.	.	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		D	R	H	P	D	E	V	F	R	L	V	N	F	W	G	A	R	S	S	G	S	D	N	Y	M	D	F	Y	I	D	N	G	R	V	K	H	P	W	A	E	T	A	F	R	D	G	M	K	H	V	A	Q	W	Y	K	E	G	L	I	D	K	E	I	F	T	R	K	A	K	A	R	E	Q	M	F	G	G	N	L	G
Template Known Secondary structure			S	S	T	T					G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T		B		T	T	T	T	T		G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	.	.	.	.	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	.	.	.	.	.	.	.	.	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I
Query Conservation																		.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	T	H	D	W	F	A	S	T	M	T	F	N	E	G	L	A	K	T	V	P	G	F	K	L	I	P	I	A	P	P	T	N	S	K	G	Q	R	W	E	E	D	S	R	Q	K	V	R	P	D	G	W	A	I	T	V	K	N	K	N	P	V	E	T	I	K	F	F	D	F	Y	F	S	R	P	G	R	D	I
Template Known Secondary structure													T					T	T	T	T	S	T	T										B		T	T	S				B						S	S		S						B	T	T		S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		345	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions