Job Description P16700 Confidence 99.97% Date Thu Jan 5 11:35:45 GMT 2012 Rank 5 Aligned Residues 230 % Identity 13% Template d1atga_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	A	D
Query Conservation
Alig confidence																										.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		E	L	K	V	V	T	A	T	N	F	L	G	T	L	E	Q	L	A	G	Q	F	A	K	Q	.	.	.	.	.	.	.	T	G	H	A	V	V	I	S	S	G	S	S	G	P	V	Y	A	Q	I	V	N	G	A	P	Y	N	V	F	F	S	A	D	E	K	S	P	E	K	L	D	N	Q	G	F	A	L	P	G	S
Template Known Secondary structure									G	G	G															.	.	.	.	.	.	.																					T	T				S					S	S	S									T	T		B		T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.								.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	T	.	.	.	.	.	.	.	Y	A	I	G	K	L	V	L	W	S	A	K	P	G	L	V	D	N	Q	G	K	V	L	A	G	N	G	W	R	H	I	A	I	S	N	P	Q	I	A	P	Y	G	L	A	G	T	Q	V	L	T	H	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	K
Template Known Secondary structure					.	.	.	.	.	.	.											S	S	T	T	T	S		T	T	S	G	G	G	G	S	S	S		S							T	T	T														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.														.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A
Query Conservation
Alig confidence																																								.	.																		.	.	.
Template Conservation																																								.	.																		.	.	.
Template Sequence		L	T	A	Q	E	R	I	V	E	A	N	S	V	G	Q	A	H	S	Q	T	A	S	G	A	A	D	L	G	F	V	A	L	A	Q	I	I	Q	A	.	.	A	A	K	I	P	G	S	H	W	F	P	P	A	N	Y	Y	E	.	.	.	P	I	V	Q	Q	A	V	I	T	K	S	T	A	E	K	A	N	A	E	Q
Template Known Secondary structure					T	T						S	S										T	T	S	S	S						G	G	G	T			T	.	.	T	S			S	S							G	G	G	S		.	.	.									B	T	T		S
Template Predicted Secondary structure																																								.	.																		.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	R	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	M	S	W	M	K	G	P	K	A	V	A	I	I	K	A	A	G	Y	V	L	P
Template Known Secondary structure						T	T	S										T	T		B
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions