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Job DescriptionP16700
Confidence99.97%DateThu Jan 5 11:35:45 GMT 2012
Rank9Aligned Residues222
% Identity17%Templated1amfa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.75

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  ELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPAD
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Template Sequence  KITVFAAASLTNAMQDIATQFKKE. . . . . . . KGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTAT
Template Known Secondary structure  GGG.......


T


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SSTT
B
GGG
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   4.....10.........20....... ..30.........40.........50.........60.........70......
 
   107..110.........120.........130... ......140..... ....150.........160.........170.........180.
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Query Sequence  WQSRLPNNSSPFYSTMGFLVRKGNPKN. . . IHDWNDLVRSDV. . KLIFPNPKTSGNARYTYLAAWGAADKADGGDKGKTE
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Template Sequence  RQT. . . . . . . LLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLG. . . . . . . . . . . .
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TT







STT

TT


TTT
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   77.. 80.........90.........100.........110.........120.........130.......
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  QFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTE
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Template Sequence  . AWDTLSPKL. . APAEDVRGALALVERNEAPLGIVYGSDA. . . . VASKGVKVVATFPEDSHKK. . . VEYPVAVVEGHNN.
Template Known Secondary structure  .
GGG..SSTTSSS....
SS

GGGS

...BTT

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   138.140...... ...150.........160.........170.... .....180.........190... ......200......
 
   262.......270.........280.....
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Query Sequence  KAAKAYLNWLYSPQAQTIITDYYY
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Template Sequence  ATVKAFYDYLKGPQAAEIFKRYGF
Template Known Secondary structure  TSTT
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   207..210.........220.........230
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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