Return to main results Retrieve Phyre Job Id

Job DescriptionP16700
Confidence99.95%DateThu Jan 5 11:35:45 GMT 2012
Rank17Aligned Residues299
% Identity12%Templatec3rpwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30...... ...40.. .......50.........60.........70.........80.. .......90.........100
Predicted Secondary structure 






..















.




Query SS confidence 












.





.







































.

















Query Sequence  QATELLNSSYDVS. RELFAA. LNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKA. DVVTYNQVTDVQILHDKG
Query Conservation   
     
     .      .
   

        
  
 
      
      
  
  
.

           
   
Alig confidence 












.





.







.....


























.





..









Template Conservation            

    
   
    


 .....




          
      

    


   ..         
Template Sequence  QSNVVIXQDPGGGYGDALRKVXYDPFEKE. . . . . TGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIF. . DQETKLLGDC
Template Known Secondary structure 

S

T.....S

S

T



SB
..T
Template Predicted Secondary structure 









.....











..


Template SS confidence 















































































   28.30.........40.........50...... ...60.........70.........80.........90 .........100
 
   101... .....110.........120.........130. ........140.. .......150... ......
Predicted Secondary structure 



................













...






.






.


Query SS confidence 



. . . . . . . . . . . . . . . .


























. . .










.










.





Query Sequence  KLIP. . . . . . . . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKGNP. . . KNIHDWNDLVR. SDVKLIFPNPK. TSGNAR
Query Conservation 
   ................                           ...  
 

 

  .   
       .    
 
Alig confidence 



................


























...










.










.





Template Conservation   
                       
  
 

       
 



       
 

 

       
             
Template Sequence  CLADIDYSKLSESAHKTLAAXPDNLKRKKGVALQVIGVGLVYNKDKFKGDKAPQTWADFWDVKKFPGRRCXPAWPRFTFE
Template Known Secondary structure  B



GGGS
TS
GGGTTTTTS
TTSS

S
TTTS
S
SSSTT
Template Predicted Secondary structure 











































Template SS confidence 















































































   101........110.........120.........130.........140.........150.........160.........170.........180
 
   160.........170.........180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  YTYLAAWGAADKADGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPK
Query Conservation                             
  
                  
   
                      
 
 
Alig confidence 












































.





















..









Template Conservation                      
   
  
                 .   
                  ..         
Template Sequence  AALXADGVTKDKLYPIDXDRALKKLKEIKPHVVKWWTTAAQPPQL. ILDGEADXCLAYTGSXSKLALE. . GAPIDLTFNQ
Template Known Secondary structure  TT

TTS

S

GGG
STT.TTS
S..T
S
Template Predicted Secondary structure 

















.







..







Template SS confidence 















































































   181........190.........200.........210.........220..... ....230.........240....... ..250.......
 
   240.........250.........260.........270.........280.. .......290... ......300.........310....
Predicted Secondary structure 

















.






....





Query SS confidence 










































.










. . . .




















Query Sequence  TNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITD. YYYRVNNPEVM. . . . DKLKDKFPQTELFRVEDKFGS
Query Conservation   
              
   
   
  






 
 
 
 
 . 
  
 
  
 ....                     
Alig confidence 


.....


































.










....




















Template Conservation     .....      
   
     
  

  
 
 
 
   
   
  
                               
Template Sequence  GFV. . . . . YYDFFSIPKGAPNYDNALKLLSWRLDPKRAAQLTSTFPVALPSKVVFDAATDKNIARYWANNPENVAKAIEW
Template Known Secondary structure  .....
BTT
TTT
S

B
S

S
GGGGGGSTTSS


Template Predicted Secondary structure 

.....
























Template SS confidence 















































































   258.260 .........270.........280.........290.........300.........310.........320.........330..
 
   315....320.........330.......
Predicted Secondary structure 






Query SS confidence 






















Query Sequence  WPEVMKTHFTSGGELDKLLAAGR
Query Conservation 
                      
Alig confidence 






















Template Conservation      
           
      
Template Sequence  SPDFWGAPSPAGNSTNEEYGQEK
Template Known Secondary structure 
SB
TTSSSB
Template Predicted Secondary structure 
Template SS confidence 






















   333......340.........350.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions