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Job DescriptionP16700
Confidence75.83%DateThu Jan 5 11:35:45 GMT 2012
Rank110Aligned Residues231
% Identity12%Templatec3r6uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
Resolution1.61 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  TELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIP.
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Template Sequence  QTIKIGAQSMSE. . . SEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNG. EIDIAATRYTGDALTGTLRMEPEKD
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STT.S
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   12.......20... ......30.........40.........50.........60.. .......70.........80.......
 
   105....110.........120.........130... ......140.........150.........160.........170
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Query Sequence  . . . . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKGNPKN. . IHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAAD
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Template Sequence  PDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTY
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BSGGGGGGGGG

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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  KADGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKTNILAEFPVAW
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Template Sequence  GMTF. . . . . . . . . . . . . . . . . GGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSY. . . . . GLKMLKDDKQFFPPYDCSP
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   168.170. ........180.........190.........200...... ...210.........220.....
 
   251........260.........270 .........280..
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Query Sequence  VDKNVQANGTEKAAKAYLNW. . LYSPQAQTIITD
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Template Sequence  VVPEKVLKEHPELEGIIKKMLGKIDTATMQELNY
Template Known Secondary structure  STTTTTT


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   226...230.........240.........250.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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