Job Description P16700 Confidence 99.95% Date Thu Jan 5 11:35:45 GMT 2012 Rank 19 Aligned Residues 288 % Identity 19% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																																											.	.	.
Query SS confidence															.	.																																											.	.	.
Query Sequence		V	Q	A	T	E	L	L	N	S	S	Y	D	V	.	.	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	.	.	.	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H
Query Conservation															.	.																																											.	.	.
Alig confidence															.	.																.	.	.	.	.	.	.																					.	.	.											.
Template Conservation																																.	.	.	.	.	.	.																																		.
Template Sequence		L	A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	.	.	.	.	.	.	.	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	.	G	G	N	D	X	Y	R	L	I
Template Known Secondary structure			T	T																				T								.	.	.	.	.	.	.																								S	S		S		S					.
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																		.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.
		98	.	100	.	.	.	.															.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.	.
Query Sequence		D	K	G	K	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	.	.	.	.	.	T	S	G	N
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.	.
Template Conservation
Template Sequence		R	A	K	K	L	A	Q	V	D	E	K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	D	K	I	Q	G	G	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	V	F	F	N	N	L	S	S	N	V
Template Known Secondary structure			T	T		B					T	T	T		G	G	G	G	G	S		G	G	G	T	G	G	G	T	T	S						B									T	T	T	S	T	T			S	S											T	T	T	T	T							G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I
Query Conservation
Alig confidence																																																	.																									.
Template Conservation																																																	.																									.
Template Sequence		R	G	A	E	V	L	S	X	F	G	K	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	V	L	.	L	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	.	G	X	V	K	W	V	D
Template Known Secondary structure		S													S	S	S	T	T													G	G	G							S	T	T						.				T	S		S																T	T	.	T	S	S
Template Predicted Secondary structure																																																	.																									.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.											.	.	.	.	.	.	.	.
Query SS confidence																																																.											.	.	.	.	.	.	.	.
Query Sequence		P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	.	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V
Query Conservation																																																.											.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																													.											.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		P	T	E	G	A	V	S	S	G	P	V	X	A	V	.	.	.	.	V	K	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q	K	A	F	C	E	A	X	Y	Y	G	A	V	N	R	K	V	Q	Y	S	E	K	L	K	H	R	L	P	S	I	D	S	V	Q	L	V	D	T	A	L	L
Template Known Secondary structure			T	T												.	.	.	.	B	T	T	S													T	S												T		B		S		T	T					T	T	T	T	T	T	S			T	T	T		B
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	K	F	G	S	W	P	E	V	M	K	T	H	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	N	X	S	A	L	L	D	L	W	N	K	R	I	A
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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