Phyre 2 alignment of P16700 with c3ombA

Job Description P16700
Confidence 98.97% Date Thu Jan 5 11:35:45 GMT 2012

Rank 80 Aligned Residues 233

% Identity 12% Template c3ombA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	.	.	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.															.	.																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.																																			.
Template Sequence	Q	W	A	K	D	L	E	A	D	.	.	.	.	.	C	D	C	K	I	E	W	Q	E	V	T	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	I	A	D	V	N	L	N	.	G	Y	G	A	V	E	A	Y	Q	Y	P	G	X	F	E	D	L	S	K	D	L	D	K	L	P	N	V	K	A	F	F
Template Known Secondary structure										.	.	.	.	.		T	S																							T				S				S	.	S			T						S	T	T	S	B			G	G	G	G	G	G	G
Template Predicted Secondary structure										.	.	.	.	.																																			.
Template SS confidence
	58	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

										105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.									.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.									.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	.	.	.	.	.	.	M	G	F	L	V	R	K	G	.	.	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A
Query Conservation	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.									.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.									.	.	.	.	.
Template Conservation
Template Sequence	K	Q	K	P	D	A	K	K	X	S	T	D	S	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K	A	W	L	D	K	L	G	L	Q	V	P	T	T	W	D	E	L	E	N	V	L	K	A	F	K	T	Q	D	P	N	G	N	G	Q	A	D	E	I	P	X	N
Template Known Secondary structure													T	T	S			S	S							G	G	G		S		S														T						B														S		T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

	165	.	.	.	.																																								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence	A	W	G	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	.	.	.	.	F	D	T	G	G	R	G	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence	I	K	K	L	E	G	S	Y	F	T	W	Y	S	P	X	L	L	L	N	S	T	G	I	V	T	G	F	N	K	G	V	S	E	Y	G	F	Y	A	K	N	G	V	V	K	S	F	L	T	S	D	E	Y	K	E	V	I	K	Y	Y	H	K	L	I	S	E	G	L	I	P	A	E	W	A	T	K	D	D	D	A	Y
Template Known Secondary structure						S	S	S			T	T		G	G	G	G	G	G	G	G	T					T	T	S	S	G	G	G	G	T					T	T					G	G	G	S																T	T	S	S		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.												.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	.	.	.	.	.	.	.	.	.	.	.	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	A	D	Q	I	S	D	G	K	T	A	K	T	G	V	V	F	G	W	S	P	S	D	N	F	G	K	L	K	D	Q	Y	I	A	X	P	V	P	S	A	P	G	V	S	P	D	Q	T	V	W	D	G	S	S	S	E	L	S	P	A	G	L	S	I	S	S	H	A	A	N	K	D	A	A	L	K	L	A	N	L
Template Known Secondary structure						T	T	S	S	S									S							G	G	G	G	G	G								B		T	T			G	G	G								S	S									B	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

	271	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Y	S	P	Q	A	Q	T	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	Y	S	E	K	Y	S	V	Q	Q
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
	372	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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