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Job DescriptionP16700
Confidence99.84%DateThu Jan 5 11:35:45 GMT 2012
Rank47Aligned Residues300
% Identity16%Templatec3oaiB_
PDB info PDB header:membrane protein, cell adhesionChain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930....... ..40.........50.........60.........70.........80.........90.........100....
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Query Sequence  LNSSYDVSR. . ELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIP. .
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Template Sequence  LVIWINGDKGYNGLAEVGKKFEKD. . . . . TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AHDRFGGYAQSGLLAEIT
Template Known Secondary structure 

TTS
S.....S




TTTTT
S
S.GGGTT
B



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   7..10.........20.........30 .........40.........50.........60.. .......70.........80
 
   105....110.........120.........130... ......140.........150.........160........
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Query Sequence  . . . . . . . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKGNPKN. IHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGA
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Template Sequence  PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL
Template Known Secondary structure 

TTB
TTT
S

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SS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   169170........ .180.........190.........200.........210.........220.........
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Query Sequence  ADKADGGDKG. . . . . . . . . . . . . . . . . . . KTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYE
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Template Sequence  IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
Template Known Secondary structure  TT
TTSSSTTSS
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   230... ......240.........250.........260......... 270.........280.. .......290.........300......
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Query Sequence  AQGF. EVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLN. WLYSPQAQTIITD. YYYRVNNPEVMDKLKDKFPQTELF
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   307..310. ........ 320.........330....
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Query Sequence  RVEDK. . . . . . . FGSWPEVM. . . . . . . KTHFTSGGELDKLLA
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Template Sequence  MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALK
Template Known Secondary structure  S


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   321........330.........340.........350.........360..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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