Job Description P16700 Confidence 97.99% Date Thu Jan 5 11:35:45 GMT 2012 Rank 81 Aligned Residues 222 % Identity 12% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	.	.	.	.	.	.	.	T	G	Y	Q	V	K	A	F	F	A	P	D	Y	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G	N	K	A	A	X	E	A	V	D	R	A	H	G	E	I	F	A	Q	T	V	A	A	S	G	A	P	G	Y
Template Known Secondary structure																.	.	.	.	.	.	.		S	S								S	S										T	T	S		S																S											T	T			S
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	.	.	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F
Query Conservation																											.	.
Alig confidence				.	.	.	.										.	.									.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.										.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	.	.	.	.	L	L	I	A	N	K	D	S	K	.	.	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	F	G	N	G	D	P	N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P	V	K	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	T
Template Known Secondary structure				.	.	.	.						T	T		S	.	.			S							T	G	G	G								T	T		T	T	T	T							T	T	T	T	T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure				.	.	.	.										.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.					.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.															.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	.	.	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y
Query Conservation																																						.	.
Alig confidence																																						.	.																				.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.
Template Sequence		L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	K	S	P	L	I	P	G	D	P	L	V	W	.	.	.	.	.	.	R	N	N	L	S	D	E	Q	K	N	K	L	R	D	F	F	F
Template Known Secondary structure															T	T	S	S	S																					T	T																		.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
						273	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.												.	.	.
Query SS confidence		.	.	.	.												.	.	.
Query Sequence		.	.	.	.	S	P	Q	A	Q	T	I	I	T	D	Y	.	.	.	Y	Y	R	V	N	N	P	E
Query Conservation		.	.	.	.												.	.	.
Alig confidence		.	.	.	.												.	.	.
Template Conservation
Template Sequence		K	Y	G	A	N	A	E	Q	K	K	V	L	A	D	L	Q	W	S	K	F	Q	A	S	D	D	D
Template Known Secondary structure						S										T	T									G	G
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions