Job Description P16700 Confidence 96.55% Date Thu Jan 5 11:35:45 GMT 2012 Rank 94 Aligned Residues 224 % Identity 12% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		26	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		T	E	L	L	N	S	S	Y	.	.	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I
Query Conservation										.	.
Alig confidence										.	.																		.	.	.	.	.	.	.																								.																			.	.	.	.
Template Conservation																													.	.	.	.	.	.	.																								.																			.	.	.	.
Template Sequence		D	K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	.	.	.	.	.	.	.	H	G	F	D	V	K	T	T	A	L	D	N	A	V	A	W	Q	T	V	A	N	G	Q	.	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	.	.	.	.
Template Known Secondary structure											S																		.	.	.	.	.	.	.	T	T																			T	T	S	.	S	S								T	T	T	T						.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.																								.																			.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.								.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F
Query Conservation
Alig confidence		.																										.	.
Template Conservation		.																										.	.
Template Sequence		.	K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	.	.	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A
Template Known Secondary structure		.			G	G	G																			T	T	.	.	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
Template Predicted Secondary structure		.																										.	.
Template SS confidence
			388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		M	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	.	.	.	.	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T										S		T					S		.	.	.	.					B		T	T		T	T												T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		465	.	.															.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.					.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	V	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions