Job Description P16700 Confidence 25.65% Date Thu Jan 5 11:35:45 GMT 2012 Rank 129 Aligned Residues 191 % Identity 12% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T
Query Conservation
Alig confidence											.	.	.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	A	R	E	X	A	K	A	.	.	.	.	.	.	.	X	G	V	K	L	K	L	V	P	T	S	W	D	G	L	I	P	G	L	V	T	E	.	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	V	N	F	V	E	P	Y	I	V	V	G
Template Known Secondary structure											.	.	.	.	.	.	.		T										G	G	G							T	T	.	S		S				S	S		B						.	.	.	.	.	.	.	.	.	.	.	.		T	T	S				S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.													.	.	.	80	.	.	.	.	.	.	.	.	.	90
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	K	P	E	L	T	L	V	T	K	F	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	E	Y	A	A	K	R	L	F	K	N	A	K	L	K	T	Y	D	T	E	A	E
Template Known Secondary structure								T	T	T	T	T	T			S	G	G	G	G			S	S							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	S						S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																										.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	.	.	.	.	S	P	Q	A	Q
Query Conservation																																																																									.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.
Template Sequence		A	V	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	.	.	.	.	.	.	.	K	K	G	D	P	D	F	L	N	W	L	N	H	F	L	A	Q	I	K	H	D	G	S	Y	D
Template Known Secondary structure								S	S	S	S																	T	T	T	T	T									S									.	.	.	.	.	.	.		T	T																			S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	I	T	D	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	Y	E	R	W	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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