Job Description P16700 Confidence 97.90% Date Thu Jan 5 11:35:45 GMT 2012 Rank 84 Aligned Residues 235 % Identity 10% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	H	V	Q	A	T	E	L	L	N	S	S	Y	D	V	S	R	.	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K
Query Conservation																			.
Alig confidence																			.															.	.	.	.	.														.										.
Template Conservation																																		.	.	.	.	.														.										.
Template Sequence		G	H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	.	.	.	.	.	G	L	D	V	E	L	V	T	F	T	D	Y	V	.	T	P	N	A	A	L	D	D	G	.	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D
Template Known Secondary structure				S											T	T																		.	.	.	.	.										S		T	T	.	S								T	.	S		S
Template Predicted Secondary structure																																		.	.	.	.	.														.										.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	K	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	.	.	.	.	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																				S	S		S		S	T	T		.	.	.	.		T	T								S														T	T	S					T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
		99													100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G
Query Conservation
Alig confidence																																																												.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q	L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	.	.	.	.	.	.	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V
Template Known Secondary structure		S	S			G	G	G					T	T									G	G	G					T	T	T	S	S										G	G	G	T								S					.	.	.	.	.	.	S	S	S	S									T	T	T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	E	N	V	Q	N	F	V	K	A	Y	Q	T	E	E	V	Y	T	A	A	K	E	I	F
Template Known Secondary structure		T	S											T	S											T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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