Job Description P16700 Confidence 99.65% Date Thu Jan 5 11:35:45 GMT 2012 Rank 76 Aligned Residues 309 % Identity 12% Template c3i3vC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor Resolution 2.30 Å

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		23	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																																										.
Query SS confidence												.	.	.	.																																										.
Query Sequence		V	Q	A	T	E	L	L	N	S	S	.	.	.	.	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	.	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H
Query Conservation												.	.	.	.																																										.
Alig confidence												.	.	.	.																				.	.	.	.																			.
Template Conservation																																			.	.	.	.
Template Sequence		S	D	P	D	T	L	V	V	H	T	Q	L	G	T	T	A	P	G	S	P	T	Y	L	A	A	V	D	R	F	R	E	E	N	.	.	.	.	P	G	V	K	I	K	N	L	V	N	G	D	D	L	A	Q	V	Y	E	T	S	R	L	A	R	K	E	A	D	V	V	X	V	N	L	Y	D	K	T	L	A	W	T
Template Known Secondary structure			S	T	T							S		S	S	S	S	T	T																.	.	.	.	T	T									S	T	T											T	T				S							S	T	T	G	G	G
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		98	.	100	.	.	.	.																						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																				.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																				.	.	.
Query Sequence		D	K	G	K	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	.	.	.	.	.	.	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																				.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		D	V	G	A	T	V	D	V	K	P	Y	L	D	D	W	G	L	R	G	R	V	L	P	A	A	L	A	D	W	T	D	D	E	G	R	V	R	A	F	P	Y	F	A	T	N	W	P	V	A	Y	N	R	A	L	L	D	R	A	G	V	D	A	I	P	T	T	G	D	Q	L	I	A	A	A	R	K	L	R	A	K
Template Known Secondary structure				T	S	S									G	G	G		T	T	S	B								T	B		T	T	S		B		S	B																				T			S				B														T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
					148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.													.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		.	.	.	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	.	.	.	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G
Query Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		G	I	A	P	V	T	V	G	G	N	D	W	T	G	Q	K	L	L	A	Q	I	I	Q	T	F	L	S	Q	D	E	A	R	H	V	Y	S	T	G	D	F	G	V	R	G	A	R	L	G	I	E	Y	F	A	H	L	R	D	A	G	V	F	A	D	K	A	Q	G	L	T	S	D	S	X	T	T	Q	F	N	T	E
Template Known Secondary structure		T								T	T	S												G	G	G													T		T	T	S																T	T		B		T	T	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	.	.	.	.	.	.	.	.	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	V	Q	S	A	X	S	S	A	L	A	K	V	P	E	K	V	A	G	H	T	E	V	G	G	W	P	L	A	D	G	A	A	H	D	G	P	T	V	I	R	A	Y	T	L	I	G	F	W	I	S	P	N	G	V	R	K	I	E	Q	V	E	K	F	L	R	F	X	Y	R	P	D	V	V	A	R	F	V
Template Known Secondary structure		S												T	T	S							T						B		B		T	T		S	S	S	S									S	S											T												T	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		282		.	.	.	.	.	.	.	290	.	.	.															.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	.	Y	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V	M	K	T	H	F	T	S	G	G	E	L	D	K	L	L	A	A
Query Conservation			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	S	G	R	D	X	A	L	R	T	D	A	V	S	T	G	F	P	L	V	G	A	A	Q	R	L	G	S	E	V	S	Q	V	L	L	P	D	V	Y	V	P	P	A	A	A	Q	P	L	I	T	A	T	S	T	S	F	T	R	G	T	S	P	A	R	V	R	A	A
Template Known Secondary structure									S	B			S				T	T	S								T			T	T	S						G	G	G	T	S																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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