Job Description P16700 Confidence 64.45% Date Thu Jan 5 11:35:45 GMT 2012 Rank 113 Aligned Residues 201 % Identity 16% Template c3ho7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis Resolution 1.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		T	E	L	L	N	S	S	Y	D	V	S	.	.	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I
Query Conservation													.	.
Alig confidence													.	.																	.	.	.	.	.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	R	L	N	I	A	V	L	P	T	I	A	P	Y	L	L	P	R	V	F	P	I	W	K	K	E	L	A	.	.	.	.	.	.	G	L	E	I	H	V	S	E	M	Q	T	S	R	C	L	A	S	L	L	S	G	.	E	I	D	M	A	I	I	A	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	T																S	T	.	.	.	.	.	.	T																				T	.	S		S					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.																						.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F
Query Conservation
Alig confidence		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	E	T	E	G	L	E	D	D	L	L	Y	Y	E	E	F	L	G	Y	V	S	R	C	E	P	L	F	E	Q	D	V	I	R	T	T	E	V	N	P	H	R	L	W	L	L	D	E	G	H	C	F	R	D	Q	L	V	R	F	C	Q	M	K	G	L	H	E	R	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.				T	T																	T	T	S	G	G	G	G	S	S	S	B		G	G	G			G	G	G	B				T	T	T	T	T	T	T	S	T	T					T		T	T	T	T		S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.																																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																										.	.	.																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	A	Y	S	G	G	S	M	E	A	F	M	R	L	V	E	S	G	Q	G	I	T	F	I	P	.	.	.	Q	L	T	V	E	Q	L	S	P	S	Q	K	E	L	V	R	P	F	G	M	P	R	P	V	R	E	V	R	L	A	V	R	.	.	.	.	Q	D	Y	S	R	R	K	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	S				S												T	T								.	.	.	G	G	G	G	G	G	S						T	T				B		S	S												.	.	.	.	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																										.	.	.																																	.	.	.	.
Template SS confidence
										218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.
		264	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	Y	L	N	W	L	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	L	I	G	L	L	R	S
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions