Job Description P16700 Confidence 99.88% Date Thu Jan 5 11:35:45 GMT 2012 Rank 27 Aligned Residues 249 % Identity 15% Template c3cfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	.	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I
Query Conservation																																																								.
Alig confidence																														.	.	.	.	.	.																					.
Template Conservation																														.	.	.	.	.	.
Template Sequence		G	E	V	L	T	V	F	H	A	G	S	L	S	V	P	F	E	E	L	E	A	E	F	E	A	Q	H	P	.	.	.	.	.	.	G	V	D	V	Q	R	E	A	A	G	S	A	Q	S	V	R	K	I	T	E	L	G	K	K	A	D	V	L	A	S	A	D	Y	A	L	I	P	S	L	M	V	P	E	Y	A	D
Template Known Secondary structure											G	G	G															S	T	.	.	.	.	.	.	T																			T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.													.
Query SS confidence																												.	.	.	.													.
Query Sequence		P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	.	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	.	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G
Query Conservation																												.	.	.	.													.
Alig confidence					.	.	.	.	.	.	.	.	.															.	.	.	.													.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		W	Y	A	.	.	.	.	.	.	.	.	.	A	F	A	R	N	Q	M	I	L	A	Y	T	N	E	S	K	Y	G	D	E	I	N	T	D	N	W	Y	E	I	L	R	R	P	D	V	R	Y	G	F	S	N	P	N	D	D	P	A	G	Y	R	S	Q	M	V	T	Q	L	A	E	S	Y	Y	N	D	D	M	I	Y
Template Known Secondary structure					.	.	.	.	.	.	.	.	.													T	T	S	T	T	T	T	T			T	T	T							S	T	T								T	T	T																		T	T		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		179	180	.	.	.	.	.	.	.																							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	E	Q	F	M	T	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	L	M	L	A	N	T	G	M	T	L	T	T	E	E	N	G	T	A	L	I	H	V	P	A	S	E	E	I	S	P	N	T	S	K	I	M	L	R	S	M	E	V	E	L	S	S	A	L	E	T	G	E	I	D	Y	L	Y	I	Y	R	S	V	A	E	Q	H	G	F	E	Y	V	A	L	P	P	A	I	D
Template Known Secondary structure					T	G	G	G	S	S							T	T	S									G	G	G					T	T	T					S	S	G	G	G	G						T	T	S		S													T								T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
							226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	R	V	N
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		L	S	S	L	E	Y	A	D	N	Y	S	K	V	Q	V	E	M	V	N	G	E	V	V	T	G	S	P	I	V	Y	G	V	T	I	P	N	N	A	E	N	S	E	L	A	T	E	F	V	A	L	L	L	G	E	T	G	Q	Q	I	F	I	E	N	G	Q	P	P	I
Template Known Secondary structure		S			G	G	G					T	T						T	T	S																T	T		S														S										T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions