Job Description P16700 Confidence 99.97% Date Thu Jan 5 11:35:45 GMT 2012 Rank 4 Aligned Residues 310 % Identity 11% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		S	L	A	L	V	A	S	L	L	L	A	G	H	V	Q	A	T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	.	.	.	.	.	L	Q	G	L	K	A	D	V
Query Conservation																																																																					.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		A	L	A	Q	V	A	V	F	P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	.	.	.	.	.	.	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F
Template Known Secondary structure												T	T			T	T										S																	T	.	.	.	.	.	.	T																							T	T			B		S
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	.	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P
Query Conservation																						.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		A	F	S	S	A	M	D	L	Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H
Template Known Secondary structure					S											T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T					T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G
Query Conservation
Alig confidence																																																						.																									.
Template Conservation																																																						.																									.
Template Sequence		G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	.	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	.	P	D
Template Known Secondary structure		T							T	T	T																T	T											T	T					S									.			T	T	S		S															T	T		.	T	T
Template Predicted Secondary structure																																																						.																									.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.										.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																				.												.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.												.	.	.	.	.	.	.	.	.
Query Sequence		F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q
Query Conservation																																																				.												.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																																				.												.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.
Template Sequence		V	G	I	V	L	P	K	D	Y	T	V	V	.	.	.	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A	N	T	M	Q	A	I	H	G	A	Q	L	R	P
Template Known Secondary structure								S	S					.	.	.									T	T	B	S	S													S											S				B			T	T			S	S	S	B									G	G	G
Template Predicted Secondary structure														.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V	M	K	T	H	F	T	S	G	G	E	L	D	K	L	L	A
Query Conservation
Alig confidence																	.						.	.	.
Template Conservation																	.						.	.	.
Template Sequence		V	P	V	S	P	G	L	M	V	Y	L	D	Q	V	K	.	R	S	R	L	I	.	.	.	E	R	W	N	E	A	L	R
Template Known Secondary structure				S	T	T	G	G	G	G	S						.						.	.	.
Template Predicted Secondary structure																	.						.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.				.	.	.	.	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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