Job Description P16700 Confidence 99.81% Date Thu Jan 5 11:35:45 GMT 2012 Rank 59 Aligned Residues 302 % Identity 13% Template c2zykA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin Resolution 2.50 Å

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		27	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.	.	.																																	.	.
Query SS confidence													.	.	.																																	.	.
Query Sequence		E	L	L	N	S	S	Y	D	V	S	R	.	.	.	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	.	.	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K
Query Conservation													.	.	.																																	.	.
Alig confidence													.	.	.														.	.	.	.	.															.	.																			.
Template Conservation																													.	.	.	.	.																																			.
Template Sequence		K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	K	.	.	.	.	.	T	G	I	Q	V	E	V	V	P	V	A	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	.	P	H	D	R	L	G	E	A	V	T	K	G	L
Template Known Secondary structure											S	S																	.	.	.	.	.												T	T	T									G	G	G	T		S		S					.		G	G	G	T	T					T	T
Template Predicted Secondary structure																													.	.	.	.	.																																			.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.
		102	.	.																		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.
Query Sequence		L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	.	.	.	.	T	S	G	N	A	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																					.	.	.	.
Template Conservation
Template Sequence		L	Q	P	I	Q	V	D	N	S	V	K	N	Q	F	D	D	V	A	M	K	A	L	T	Y	G	G	K	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	G	Q	V	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K	P	D	E	Q	K	Y	G	V	L	F	E	A	N	N
Template Known Secondary structure														T	B								T			T	T																		T	T	T		S	S			S	B													B	T	T	T	T	B							T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	Y	T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S	G	K	V	A	A	V	I	N	G	P	W	A	I	K
Template Known Secondary structure										T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																							.																																								.												.	.	.	.	.	.	.
Query SS confidence																							.																																								.												.	.	.	.	.	.	.
Query Sequence		N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	.	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	.	.	.	.	.	.	.
Query Conservation																							.																																								.												.	.	.	.	.	.	.
Alig confidence																							.																																								.												.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Y	Q	A	A	G	I	N	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F	K	E	T	G	E	I	P	P	Q	K	E	L	L	N	D	P	M	I	K	N
Template Known Secondary structure						T	T										B	S	S	S	S															T	T		S														S																	B											S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
										294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	E	D	K	F	G	S	W	P	E	V	M	K	T	H	F	T	S	G	G	E	L	D	K	L	L	A
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	V	V	N	G	F	A	K	Q	A	S	K	G	V	P	M	P	S	I	P	E	M	G	V	V	W	E	P	I	N	N	A	H	T	F	V	A	Q	G	K	Q	T	P	E	Q	A	L	N
Template Known Secondary structure													T	T							S	G	G	G																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions