Job Description P16700 Confidence 99.93% Date Thu Jan 5 11:35:45 GMT 2012 Rank 22 Aligned Residues 285 % Identity 13% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I	P	.	.
Query Conservation																																																																																.	.
Alig confidence							.																				.	.	.	.	.																																.																	.	.
Template Conservation							.																				.	.	.	.	.																																.
Template Sequence		D	V	L	Y	L	.	Y	N	W	T	Y	Y	T	P	T	S	L	I	K	K	F	E	Q	Q	Y	.	.	.	.	.	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	G	A	S	G	Y	D	L	V	V	P	.	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D
Template Known Secondary structure							.				T	T	T	S													.	.	.	.	.	T									S										S	S	S			S		S					.	B										T	T
Template Predicted Secondary structure							.																				.	.	.	.	.																																.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
																			105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	.	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																											.	.
Template Conservation																																																																											.	.
Template Sequence		L	S	K	I	P	N	V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	S	R	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M	.	.	G	A	A	L	A
Template Known Secondary structure		G	G	G		G	G	G	G	G	B									T	T	S	T	T		S	S															T	T	T			S			S	S	G	G	G	G	G		G	G	G	T	T	S					S							.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	.	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		S	L	G	Y	N	V	N	T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	P	V
Template Known Secondary structure			T	T			T	T																		T	G	G	G						S	S	S								T	S		S													S		G	G	G	G	G	G							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.
Predicted Secondary structure																																							.																											.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																											.	.	.	.	.	.	.	.	.
Query Sequence		F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V	N	N	P	E	V	M	D	K	L	K	D	K	F	P	Q	T	E	L	F	R	V	.	.	.	.	.	.	.	.	.	E	D	K	F	G	S	W
Query Conservation																																							.																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																				.																											.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	Y	V	D	S	F	C	I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G	F	P	S	T	I	H	R	E	A	A	A	Y	Q	K	K	T	P	Y	Y	S	E	H	D	L	E	R	G	T	L	K	T	D	V	G	A	A	I	E	H	Y
Template Known Secondary structure		.	.						B			T	T		S													T	S												T				S	S	B	T	T	G	G	G	G			S			S	S		G	G	G	G	S	S	S							G	G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		316	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	M	K	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	H	W	N	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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