Job Description P16700 Confidence 97.31% Date Thu Jan 5 11:35:45 GMT 2012 Rank 91 Aligned Residues 240 % Identity 11% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		A	T	E	L	L	N	S	S	Y	D	V	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	.	.	.	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K
Query Conservation																																																													.	.	.
Alig confidence																															.																														.	.	.																		.
Template Conservation																															.																																																		.
Template Sequence		N	K	P	L	D	I	I	V	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	.	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	.
Template Known Secondary structure			S							S	S		T	T	S															T	.	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S	.
Template Predicted Secondary structure																															.																																																		.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	.	.	.	.	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K
Query Conservation																																															.	.	.	.
Alig confidence		.																														.	.														.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																														.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	L	P	F	D	P	K	K	D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	.	.	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.		S	S		T	T	T	S																		T	T		S	.	.			S								T		S	S	S								S	S	T	T	S										.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																														.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.														240	.	.		.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	I	.	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence		.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G
Template Known Secondary structure		.	.	.	.	.	.					T									S	S										T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	.	.	.	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	R	V
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T
Template Known Secondary structure														T	T	S																													T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions