Job Description P16700 Confidence 99.77% Date Thu Jan 5 11:35:45 GMT 2012 Rank 67 Aligned Residues 263 % Identity 13% Template c2i58B_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose Resolution 2.80 Å

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		26	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.	.	.																																																				.
Query SS confidence													.	.	.																																																				.
Query Sequence		T	E	L	L	N	S	S	Y	D	V	S	.	.	.	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	.	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K
Query Conservation													.	.	.																																																				.
Alig confidence													.	.	.																	.	.	.	.																																.
Template Conservation																																.	.	.	.
Template Sequence		S	T	V	T	I	E	Y	F	N	Q	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	.	.	.	.	K	I	K	V	K	V	V	N	V	P	N	A	G	E	V	L	K	T	R	V	L	A	G	D	V	P	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V
Template Known Secondary structure													G	G	G													T	T		T	.	.	.	.	T									S	S											T	T				S						T	T	S									T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		102	.	.																	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	.	.	.	.	.	N	P	K	N	I	H	D	W	N	D	L	V	R	.	.	.	.	.	.	.	.	S	D	V	K	L	I	F	P	N	P
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	D	L	S	N	K	D	Y	L	K	R	V	K	N	G	Y	A	E	K	Y	A	V	N	E	K	V	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	K	V	P	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A	K	G	Q	T	P	F	G	I	A	G	A
Template Known Secondary structure		B				T	T		S	G	G	G	G	B	G	G	G					T		B	T	T	B							B	B																T						B													T	T	T				B				T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	.	.	.	G	A	T	T	T	F	A	E	R	G	L	G	D
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		D	A	W	T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D	V	I	G	A	F	A	R	G	D	V	L
Template Known Secondary structure			G	G	G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.																																.
Query SS confidence																																									.	.	.	.																																.
Query Sequence		V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	.	.	.	.	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	.	Y	Y	Y	R	V
Query Conservation																																									.	.	.	.																																.
Alig confidence																																									.	.	.	.																																.
Template Conservation
Template Sequence		M	T	P	N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P	E	V	M	Q	K	Y	Y	D	V	D	G	S	P	T
Template Known Secondary structure							G	G	G							T			S	S							B		B	S	S	T	T			B					B	S	S					B	S	S		S													T	S															B
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		288	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	E	G	V
Template Known Secondary structure			B	T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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