Job Description P16700 Confidence 31.69% Date Thu Jan 5 11:35:45 GMT 2012 Rank 124 Aligned Residues 216 % Identity 12% Template c2h9qC_ PDB info PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) Resolution 2.49 Å

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		25	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		A	T	E	L	L	N	S	S	Y	D	V	.	S	R	E	L	F	A	A	L	N	P	P	F	E	Q	Q	W	A	K	D	N	G	G	D	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	H	D	K	G	K	L	I
Query Conservation													.
Alig confidence													.																		.	.	.	.	.	.																						.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.																						.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	T	L	R	I	G	Y	V	S	S	L	L	Y	G	L	L	P	E	I	I	Y	L	F	R	Q	Q	N	P	.	.	.	.	.	.	E	I	H	I	E	L	I	E	C	G	T	K	D	Q	I	N	A	L	K	Q	G	.	K	I	D	L	G	F	G	R	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											G	G	G	G	G	T	T													T	.	.	.	.	.	.	T	S																			T	.	S		S					S	S			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.																						.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	W	Q	S	R	L	P	N	N	S	S	P	F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F
Query Conservation
Alig confidence		.	.	.	.																																																																							.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																							.	.	.	.	.	.
Template Sequence		.	.	.	.	T	D	P	A	I	R	H	I	V	L	H	K	E	Q	L	K	L	A	I	H	K	H	H	H	L	N	Q	F	A	A	T	G	V	H	L	S	Q	I	I	D	E	P	M	L	L	Y	P	V	S	Q	K	P	N	F	A	T	F	I	Q	S	L	F	T	E	L	G	L	V	P	S	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.		B	T	T																	T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																																							.	.	.	.	.	.
Template SS confidence
						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	F	L	K	N	V	E	V	F	D	T	G	G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																										.	.	.	.	.	.																						.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	K	L	T	E	I	R	E	I	Q	L	A	L	G	L	V	A	A	G	E	G	V	C	I	V	P	.	.	.	.	.	.	A	S	A	M	D	I	G	V	K	N	L	L	Y	I	P	I	L	D	D	D	A	.	.	.	.	Y	S	P	I	S	L	A	V	R	N	M	D	H	S	N	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	S					S	S											T	S							.	.	.	.	.	.	G	G	G	G	G	S			S	S						B			T	T		.	.	.	.										T	T				T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																										.	.	.	.	.	.																						.	.	.	.
Template SS confidence
										220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	Y	L	N	W	L	Y	S	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	R	V	N	N	P	E	V
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		I	P	K	I	L	A	C	V	.	.	.	.	.	Q	E	V	F	A	T	H	H	I	R	P	L	I	E	S	I
Template Known Secondary structure										.	.	.	.	.							T	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions