Job Description P16700 Confidence 20.94% Date Thu Jan 5 11:35:45 GMT 2012 Rank 134 Aligned Residues 219 % Identity 11% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		47	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure														.																					.	.																			.	.	.	.	.	.
Query SS confidence														.																					.	.																			.	.	.	.	.	.
Query Sequence		F	E	Q	Q	W	A	K	D	N	G	G	D	.	K	L	T	I	K	Q	S	H	A	G	S	S	K	Q	A	L	A	I	L	Q	.	.	G	L	K	A	D	V	V	T	Y	N	Q	V	T	D	V	Q	I	L	.	.	.	.	.	.	H	D	K	G	K	L	I	P	A	D	W	Q	S	R	L	P	N	N	S	S	P
Query Conservation														.																					.	.																			.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.			.																					.	.																			.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		Y	A	K	Y	.	.	.	.	.	.	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L
Template Known Secondary structure					T	.	.	.	.	.	.	T		T	T							S													G	G	G	T	S		S						T										T	T	S	S	S													B	S
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		86	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	S	T	M	G	F	L	V	R	K	G	N	P	K	N	I	H	D	W	N	D	L	V	R	S	D	V	K	L	I	F	P	N	P	K	T	S	G	N	A	R	Y	T	Y	L	A	A	W	G	A	A	D	K	A	D	G	G	D	K	G	K	T	E	Q	F	M	T	Q	F	L	K	N	V	E	V	F	D	T	G
Query Conservation
Alig confidence																												.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	.	.	.	.	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	I	V	V
Template Known Secondary structure			G	G	G	G	G	G				S			T	T							T	S	S	S		.	.	.	.					S	S	T	T	S													T	T			B	T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																.	.	.	.	220
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.								270
Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.
Query Sequence		G	R	G	A	T	T	T	F	A	E	R	G	L	G	D	V	L	I	S	F	E	S	E	V	N	N	I	R	K	Q	Y	E	A	Q	G	F	E	V	V	I	P	K	T	N	I	L	A	E	F	P	V	A	W	V	D	K	N	V	Q	A	N	G	T	E	K	A	A	K	A	Y	L	N	.	.	.	.	.	.	.	W
Query Conservation																																																																										.	.	.	.	.	.	.
Alig confidence																																.	.																																									.	.	.	.	.	.	.
Template Conservation																																.	.
Template Sequence		P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	.	.	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W
Template Known Secondary structure			G	G	G							T	T	S		S						T	T									.	.	T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure																																.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		271	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		L	Y	S	.	.	.	.	P	Q	A	Q	T	I	I	T	D	Y	Y	Y	R	V	N	N	P	E	V
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P	F	E	D
Template Known Secondary structure					G	G	G										S	T	T	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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