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Job DescriptionP16700
Confidence99.80%DateThu Jan 5 11:35:45 GMT 2012
Rank62Aligned Residues302
% Identity14%Templatec2fncA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60......... 70.........80.........90.........100....
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Query Sequence  ELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGS. . SKQALAILQGLKADVVTYNQVTDVQILHDKGKLIP
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Template Sequence  KLTIWCSEKQVDILQKLGEEFKAK. . . . . YGIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVG. AHDWVGELAVNGLIEP
Template Known Secondary structure 

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GGGT
S
S.GGGTT
B

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   6...10.........20......... 30.........40.........50.........60... ......70.........
 
   105....110.........120.........130... ......140.. .......150.........160
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Query Sequence  . . . . . . . . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKGNPKN. IHDWNDLVR. . . . . . . SDVKLIFPNPKTSGNARY
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Template Sequence  IPNFSDLKNFYDTALKAFSYGGKLYGVPYAMEAVALIYNKDYVDSVPKTMDELIEKAKQIDEEYGGEVRGFIYDVANFYF
Template Known Secondary structure 



GGGGGB
TTT



TTT
SS

SBTTTSS

TT
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   161........170........ .180.........190.........200.........210.........220.....
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Query Sequence  TYLAAWGAADKADGGDKG. . . . . . . . . . . . . . . KTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIR
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Template Sequence  SAPFILGYGGYVFKETPQGLDVTDIGLANEGAVKGAKLIKRMIDEGVLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYK
Template Known Secondary structure  TT
TTTTSTTSS
TT

TT

GGG
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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   226...230.........240........ .250.........260........ .270.........280.. .......290...
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Query Sequence  KQYEAQGFEVVIPKTNILAEFPV. . AWVDKNVQANGTEKAAKAYL. NWLYSPQAQTIITD. YYYRVNNPEVM. . . . . . . .
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Template Sequence  DAGINYGVAPIPELEPGVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPRLPARKDVLELVKDNPD
Template Known Secondary structure  TT




BSBTTB



BTT
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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   294.....300.........310.........320.........330....
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Query Sequence  . . . . . DKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
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Template Conservation                                      
      

 
Template Sequence  VVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIINGQASVEDALK
Template Known Secondary structure  T



SGGGTTTTSS
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   320.........330.........340.........350.........360.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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