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Job DescriptionP16700
Confidence99.85%DateThu Jan 5 11:35:45 GMT 2012
Rank40Aligned Residues303
% Identity15%Templatec1r6zA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TELLNSSYDVSR. . ELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLI
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Template Sequence  EGKLVIWINGDKGYNGLAEVGKKFEKD. . . . . TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AHDRFGGYAQSGLLA
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S.GGGTT
B
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Query Sequence  P. . . . . . . . . . . . . . . . . ADWQSRLPNNSSPFYSTMGFLVRKG. NPKNIHDWNDLVRSDVK. . . . LIFPNPKTSGNARYT
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Template Sequence  EITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFT
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Query Sequence  YLAAWGAADKA. . . . . . . . . . . . . . . DGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRK
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Template Sequence  WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
Template Known Secondary structure  TT
TTSSSTTSS
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Query Sequence  QYEAQGFEVVIPKTNIL. AEFPVAWVDKNVQANGTEKAAKAYLN. WLYSPQAQTIITDYYYRVNNPEVM. . . . . . . . . . .
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Template Sequence  SKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRI
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Query Sequence  . . . . DKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
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Template Sequence  AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALK
Template Known Secondary structure  S


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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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