Job Description P0AF16 Confidence 0.48% Date Thu Jan 5 11:24:53 GMT 2012 Rank 100 Aligned Residues 412 % Identity 9% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	F	V	S	Y	V	S	G	L	L	T	L	A	L	A	V	V	T	V	A	G	M	L	A	A	P	W	V	I	M	V	T	A	P	G	F	A	D	T	A	D	K	F	A	L	T	S	Q	L	L	K	I	T	F	P	Y	I	L	L	I	S	L	A	S	L	V	G	A	I	L	N	T	W	N	R	F	S	I	P
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		Y	Y	L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	.	.	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I
Template Known Secondary structure						S																																											.	.											T												T	T		T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	A	P	T	L	L	N	I	S	M	I	G	F	A	L	F	A	A	P	Y	F	N	P	P	V	L	A	L	A	W	A	V	T	V	G	G	V	L	Q	L	V	Y	Q	L	P	H	L	K	K	I	G	M	L	V	L	P	R	I	N	F	H	D	A	G	A	M	R	V	V	K	Q	M	G	P	A	I	L	G	V
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	.	.	.	.	.	.	.	.	.	.	.	R	S	N	F	E	F	G	R	A	R	M	F	G	C
Template Known Secondary structure								T								T							T	T								T	T	T	T	G	G	G	G	G	T	T															.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	Q	I	S	L	I	I	N	T	I	F	A	S	F	L	A	S	G	S	V	S	W	M	Y	Y	A	D	R	L	M	E	F	P	S	G	V	L	G	V	A	L	G	T	I	L	L	P	S	L	S	K	S	F	A	S	G	N	H	D	E	Y	N	R	L	M	D	W	G	L	R	L	C	F	L	L	A	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y
Template Known Secondary structure																																							S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	A	L	G	I	L	S	G	P	L	T	V	S	L	F	Q	Y	G	K	F	T	A	F	D	A	L	M	T	Q	R	A	L	I	A	Y	S	V	G	L	I	G	L	I	V	V	K	V	L	A	P	G	F	Y	S	R	Q	D	I	K	T	P	V	K	I	A	I	V	T	L	I	L	T	Q	L	M	N	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F
Template Known Secondary structure																					T	T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	G	P	L	K	H	A	G	L	S	L	S	I	G	L	A	A	C	L	N	A	S	L	L	Y	W	Q	L	R	K	Q	K	I	F	T	P	Q	P	G	W	M	A	F	L	L	R	L	V	V	A	V	L	V	M	S	G	V	L	L	G	M	L	H	I	M	P	E	W	S	L	G	T	M	P	W	R	L	L	R
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	.	.	.	.	.	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L
Template Known Secondary structure																																		S		G	G	G	.	.	.	.	.										T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	A	V	V	L	A	G	I	A	A	Y	F	A	A	L	A	V	L	G	F	K	V	K	E	F	A	R	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V
Template Known Secondary structure																		S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.