Job Description P0AF16 Confidence 0.50% Date Thu Jan 5 11:24:53 GMT 2012 Rank 97 Aligned Residues 271 % Identity 7% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	A	G	A	M	R	V	V	K	Q	M	G	P	A	I	L	G	V	S	V	S	Q	I	S	L	I	I	N	T	I	F	A	S	F	L	A	S	G	S	V	S	W	M	Y	Y	A	D	R	L	M	E	F	P	S	G	V	L	G	V	A	L	G	T	I	L	L	P	S	L	S	K	S	F	A	S	G	N	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K
Template Known Secondary structure					T																																G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	N	R	L	M	D	W	G	L	R	L	C	F	L	L	A	L	P	S	A	V	A	L	G	I	L	S	G	P	L	T	V	S	L	F	Q	Y	G	K	F	T	A	F	D	A	L	M	T	Q	R	A	L	I	A	Y	S	V	G	L	I	G	L	I	V	V	K	V	L	A	P	G	F	Y	S	R	Q	D	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A
Template Known Secondary structure																											T	T	S								T	G	G	G																																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		382	.	.	.	.																.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	V	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	V	T	L	I	L	T	Q	L	M	N	L	A	F	I	G	P	L	K	H	A	G	L	S	L	S	I	G	L	A	A	C	L	N	A	S	L	L	Y	W	Q	L	R	K	Q	K	I	F	T	P	Q	P	G	W	M	A	F	L	L
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S
Template Known Secondary structure								S	S			S	S			T	T	S			S		T																	S																											T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	V	A	V	L	V	M	S	G	V	L	L	G	M	L	H	I	M	P	E	W	S	L	G	T	M	P	W	R	L	L	R	L	M	A	V	V	L	A	G	I	A	A	Y	F	A	A	L	A	V	L	G	F	K
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	.	.	.	.	.	.	.	.	.	.	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.											.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions