Job Description P0AF16 Confidence 0.64% Date Thu Jan 5 11:24:53 GMT 2012 Rank 62 Aligned Residues 257 % Identity 8% Template c3dl8H_ PDB info PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Resolution 7.50 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	G	E	D	A	T	R	V	F	V	S	Y	V	S	G	L	L	T	L	A	L	A	V	V	T	V	A	G	M	L	A	A	P	W	V	I	M	V	T	A	P	G	F	A	D	T	A	D	K	F	A	L	T	S	Q	L	L	K	I	T	F	P	Y	I	L	L	I	S	L	A	S	L	V	G	A	I	L	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	G	D	Y	G	R	Y	K	I	N	E	Y	T	K	Y	L	T	L	F	V	A	T	V	Q	S	L	G	I	A	F	W	I	R	G	Q	V	S	P	K	G	I	P	V	V	E	N	P	G	I	S	F	I	L	I	T	V	L	T	L	V	A	G	T	M	F	L	V	W	I	A	D	R	I	T	E	K	G	I	G
Template Known Secondary structure		S	S	S																																	S		S	S						S	S	S	T	T	T	T																											T		T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	N	R	F	S	I	P	A	F	A	P	T	L	L	N	I	S	M	I	G	F	A	L	F	A	A	P	Y	F	N	P	P	V	L	A	L	A	W	A	V	T	V	G	G	V	L	Q	L	V	Y	Q	L	P	H	L	K	K	I	G	M	L	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	S	L	I	I	F	A	G	I	V	A	N	F	P	N	A	V	I	Q	F	Y	E	K	V	K	T	G	D	I	G	P	L	T	L	L	L	I	I	A	L	I	I	A	I	I	V	G	I	V	Y	V	Q	E	A	E	R	R	I	P	I	Q	Y	P	G	R	Q	V	G	R	Q	L	Y	A	G	R	K	T	Y
Template Known Secondary structure		T														T	T	T	T	S	S					S	S	S		S	S	S		T																		T		S										B		S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
			217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	R	I	N	F	H	D	A	G	A	M	R	V	V	K	Q	M	G	P	A	I	L	G	V	S	V	S	Q	I	S	L	I	I	N	T	I	F	A	S	F	L	A	S	G	S	V	S	W	M	Y	Y	A	D	R	L	M	E	F	P	S	G	V	L	G	V	A	L	G	T	I	L	L	P	S	L	S	K	S	F
Query Conservation		.
Alig confidence		.																																																.	.
Template Conservation																																																		.	.
Template Sequence		L	P	I	K	I	N	P	A	G	V	I	P	I	I	F	A	Q	A	L	L	L	I	P	S	T	L	L	N	F	V	Q	N	P	F	I	K	V	I	A	D	M	F	Q	P	G	A	I	F	.	.	Y	N	F	L	Y	V	T	F	I	V	F	F	T	Y	F	Y	T	A	V	L	I	N	P	V	E	L	A	E	N	L
Template Known Secondary structure											S	S																		S		S	S					T	T	T	T	T	T	T	T	T				.	.																		T		T	T								T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		296	.									.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence		A	S	.	.	.	.	.	.	.	.	G	N	H	D	E	Y	N	R	L	M	D	W	G	L	R	L	C	F	L	L	A	L	P	S	A	V	A	L	G	I	L	S	G	P	L
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	A	G	A	F	I	P	G	V	R	P	G	Q	D	T	V	K	Y	L	E	R	I	I	N	R	L	I	F	F	G	A	L	F	L	S	V	I	A	L	I	P	I	L	I
Template Known Secondary structure					B	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions