Job Description P0AF16 Confidence 4.52% Date Thu Jan 5 11:24:53 GMT 2012 Rank 6 Aligned Residues 236 % Identity 13% Template c2zqpY_ PDB info PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus Resolution 6.00 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	K	S	K	Q	G	E	D	A	T	R	V	F	V	S	Y	V	S	G	L	L	T	L	A	L	A	V	V	T	V	A	G	M	L	A	A	P	W	V	I	M	V	T	A	P	G	F	A	D	T	A	D	K	F	A	L	T	S	Q	L	L	K	I	T	F	P	Y	I	L	L	I	S	L	A	S	L	V	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	L	S	K	E	G	E	E	G	R	R	I	I	N	Q	Y	T	R	I	G	G	I	A	L	G	A	F	Q	G	F	F	L	A	T	A	F	L	G	A	E	G	G	R	F	L	L	P	G	W	S	P	G	P	F	F	W	F	V	V	V	V	T	Q	V	A	G	I	A	L	L	L	W	M	A	E	R	I	T	E
Template Known Secondary structure							S	S	G	G	G	S																		S					T	T	T	T						S	S	S	B		S	S			T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		I	L	N	T	W	N	R	F	S	I	P	A	F	A	P	T	L	L	.	.	.	N	I	S	M	I	G	F	A	L	F	A	A	P	Y	F	N	P	P	V	L	A	L	A	W	A	V	T	V	G	G	V	L	Q	L	V	Y	Q	L	P	H	L	K	K	I	G	M	L	V	L	P	R	I	N	F	H	D	A	G	A
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		Y	G	I	G	N	G	T	S	L	I	I	F	A	G	I	V	V	E	W	L	P	Q	I	L	R	T	I	G	L	I	R	T	G	E	V	N	L	V	A	F	L	F	F	L	A	F	I	V	L	A	F	A	G	M	A	A	V	Q	Q	A	E	R	R	I	P	V	Q	Y	A	R	Y	G	G	Q	A	T	Y	I	P	I
Template Known Secondary structure			S	S	S													T	T	S	S													T	S	S		T	T																					T			B											S			S				B
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	V	K	Q	M	G	P	A	I	L	G	V	S	V	S	Q	I	S	L	I	I	N	T	I	F	A	S	F	L	A	S	G	S	V	S	W	M	Y	Y	A	D	R	L	M	E	F	P	S	G	V	L	G	V	A	L	G	T	I	L	L	P	S	L	S	K	S	F	A	S	G	N	H	D	E	Y	N	R	L
Query Conservation
Alig confidence																		.	.	.	.																																																			.
Template Conservation																		.	.	.	.																																																			.
Template Sequence		K	L	N	A	A	G	V	I	P	I	I	F	A	A	A	I	.	.	.	.	L	Q	I	P	I	F	L	A	A	P	F	Q	D	N	P	V	L	Q	G	I	A	N	F	F	N	P	T	R	P	S	G	L	F	I	E	V	L	L	V	I	L	F	T	Y	V	Y	T	A	V	Q	.	F	D	P	K	R	I	A	E	S
Template Known Secondary structure			S	S	S		S	S										.	.	.	.	T	T					T	T	T	T		S	S	S	T	T								S		T	T	S																			T	T	T	S	.	S
Template Predicted Secondary structure																		.	.	.	.																																																			.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.
		307	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	W	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	E	Y
Template Known Secondary structure		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions