Job Description P04395 Confidence 23.37% Date Thu Jan 5 10:58:16 GMT 2012 Rank 131 Aligned Residues 43 % Identity 35% Template d1ku2a1 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 domain Resolution 2.90

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		V	A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	D	F	P	E	Y	I	C	F	P	T	P	Q	R	L	A	A	A	D	P	Q	A	L	K	A	L	G	.	.	M	P	L	K	R	A	E	A	L	I	H	L	A	N
Query Conservation																																																.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.					.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Sequence		I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	.	.	.	.	.	.	.	.	.	.	P	S	Y	E	E	I	A	.	.	.	.	.	.	.	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q
Template Known Secondary structure																	T	S		.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.					S	S										G	G	G	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300											.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions