Job Description P04395 Confidence 92.95% Date Thu Jan 5 10:58:16 GMT 2012 Rank 33 Aligned Residues 76 % Identity 21% Template c8iczA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) Resolution 3.10 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	D	F	P	E	Y	I	C	F	P	T	P	Q	R	L	A	A	A	D	P	Q	A	L	K	A	L	G	M	P	L	K	R	A	E	A	L	I	H	L	A	N	A	A	L	E	G	T	L	P	M	T	I	P	G	D	V	E	Q	A	M	K	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Sequence		Y	N	A	Y	R	K	A	A	S	V	I	A	K	Y	P	H	K	I	K	.	.	.	.	.	.	.	.	.	S	G	A	E	A	K	K	L	P	.	.	.	.	.	.	.	G	V	G	T	K	I	A	E	K	I	D	E	F	L	A	T	G	K	L	R	K	L	E	K	I	R	Q	D	D	T	S	S	S	I	N	F
Template Known Secondary structure																	S				.	.	.	.	.	.	.	.	.							T	S	T	.	.	.	.	.	.	.	T															S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.										.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	T	F	P	G	I	G	R	W	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	R	V	S	G	I	G	P	S	A	A
Template Known Secondary structure			T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions