Job Description P04395 Confidence 99.96% Date Thu Jan 5 10:58:16 GMT 2012 Rank 12 Aligned Residues 166 % Identity 18% Template c3kntC_ PDB info PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine Resolution 2.70 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	A	L	G	R	L	G	A	A	R	P	G	L	R	L	P	G	C	V	D	A	F	E	Q	G	V	R	A	I	L	G	Q	L	V	S	V	A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	D	F	P	E	Y	I	C	F	P	T	P	Q	R	L	A	A	A	D	P	Q	A	L	K
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Sequence		I	K	D	I	I	D	K	R	I	Q	E	F	K	S	F	K	N	K	S	N	E	E	W	F	K	E	L	C	F	C	I	L	T	A	N	F	T	A	E	G	G	I	R	I	Q	K	E	I	G	D	G	F	L	T	L	.	.	.	.	.	.	.	.	.	.	.	P	R	E	E	L	.	.	.	.	E	E	K	L	K
Template Known Secondary structure															G	G	G	G															T	S	T	T	S													T	T					S	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.												70	.	.	.	.					.	.	.	.	.
		171	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		A	L	G	.	.	M	P	L	K	R	A	E	A	L	I	H	L	A	N	A	A	L	E	G	T	L	P	M	T	I	P	G	D	V	E	Q	A	M	K	T	L	Q	T	F	P	G	I	G	R	W	T	A	N	Y	F	A	L	R	G	W	Q	A	K	D	V	F	L	P	D	D	Y	L	I	K	Q	R	F	P	G	M
Query Conservation					.	.
Alig confidence					.	.																																																										.						.
Template Conservation																																																																.						.
Template Sequence		N	L	G	H	R	F	Y	R	K	R	A	E	Y	I	V	L	A	R	R	F	K	N	I	K	D	I	V	E	S	F	E	N	E	K	V	A	R	E	F	L	V	R	N	I	K	G	I	G	Y	Q	E	A	S	H	F	L	R	N	V	G	Y	D	.	D	V	A	I	I	.	D	R	H	I	L	R	E	L	Y	E	N
Template Known Secondary structure			T	T		T	T											G	G	G	G										S	S	S												S	T	T													T	T			.	S					.											T
Template Predicted Secondary structure																																																																.						.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.
		249	250																		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	I	R	R	Y	A	E	R	W	K	P	W	R	S	Y	A	L	L	H	I	W	Y
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	I	D	E	I	P	K	T	L	S	R	R	K	Y	L	E	I	E	N	I	L	R	D	I	G	E	E	V	N	L	K	L	S	E	L	D	L	Y	I	W	Y
Template Known Secondary structure		T	S	S	S	S			S	S																					T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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