Job Description P04395 Confidence 100.00% Date Thu Jan 5 10:58:16 GMT 2012 Rank 6 Aligned Residues 179 % Identity 27% Template c2yg8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans Resolution 2.00 Å

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		86	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																			.
Query SS confidence								.	.	.	.	.	.																			.
Query Sequence		C	N	P	Q	I	V	.	.	.	.	.	.	N	G	A	L	G	R	L	G	A	A	R	P	G	L	R	L	P	G	.	C	V	D	A	F	E	Q	G	V	R	A	I	L	G	Q	L	V	S	V	A	M	A	A	K	L	T	A	R	V	A	Q	L	Y	G	E	R	L	D	D	F	P	E	Y	I	C	F	P	T	P
Query Conservation								.	.	.	.	.	.																			.
Alig confidence								.	.	.	.	.	.																			.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	H	A	G	A	V	A	H	L	S	R	D	P	V	L	A	Q	V	T	S	L	C	G	E	L	P	V	L	A	P	T	P	D	P	F	G	R	L	V	R	S	V	A	G	Q	Q	L	S	V	K	A	A	Q	A	I	Y	G	R	L	E	G	L	P	G	.	.	.	.	.	.	.	.	.	.	.	G	V	V	P
Template Known Secondary structure		S		S								T	T	S																				S													T	T	S														T	S	T	T	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		Q	R	L	A	A	A	D	P	Q	A	L	K	A	L	G	M	P	L	K	R	A	E	A	L	I	H	L	A	N	A	A	L	E	G	T	L	P	M	T	.	.	I	P	G	D	V	E	Q	A	M	K	T	L	Q	T	F	P	G	I	G	R	W	T	A	N	Y	F	A	L	R	G	W	Q	A	K	D	V	F	L	P
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		A	A	L	L	K	V	S	G	D	D	L	R	G	V	G	L	S	W	A	K	V	R	T	V	Q	A	A	A	A	A	A	V	S	G	Q	I	D	F	A	H	L	S	G	Q	P	D	E	L	V	I	A	E	L	V	Q	L	P	G	I	G	R	W	T	A	E	X	F	L	L	F	A	L	A	R	P	D	V	F	S	S
Template Known Secondary structure					T	T	S								T	T																		T	T	S	S		G	G	G	G	G	G	S											T	S	T	T													T	S			S					T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		D	D	Y	L	I	K	Q	R	F	P	G	M	.	T	P	A	Q	I	R	R	Y	A	E	R	W	K	P	W	R	S	Y	A	L	L	H	I	W	Y	T	E
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		G	D	L	A	L	R	Q	G	V	E	R	L	Y	P	G	E	D	W	R	D	V	T	A	R	W	A	P	Y	R	S	L	A	S	R	Y	L	W	A	N	S
Template Known Secondary structure		T												S	T	T	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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